PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do001930.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family WRKY
Protein Properties Length: 301aa    MW: 32873.3 Da    PI: 4.6082
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do001930.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.43.8e-3094152259
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+v+ +tY+ eHnh+
  Do001930.1  94 SDSWTWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRADPTVLLVTYTFEHNHP 152
                 69*************************998****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.3E-3190154IPR003657WRKY domain
SuperFamilySSF1182903.92E-2692154IPR003657WRKY domain
SMARTSM007741.3E-3693153IPR003657WRKY domain
PROSITE profilePS5081131.96194154IPR003657WRKY domain
PfamPF031062.9E-2695152IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MSSAEDGYCS SDSPRAESPE ESQAAAAAAA EDAESPRAGV KRERDLRDIP ASPSSPLPAA  60
KRSRRSVEKR VVSVPLAECG DRPRGASGEG PPPSDSWTWR KYGQKPIKGS PYPRGYYRCS  120
SSKGCPARKQ VERSRADPTV LLVTYTFEHN HPCPQPKSSS SCQQQGKPSP RPPAPKPEPA  180
VEQAELGPEH ELTEPEAPEP EQEPEQEEQK VLVTLVAPET ATTATVAPVA EEDESFDFGW  240
FDQYPTWHRS ALYAPLLPPE EWERELQGED ALFAGLGELP ECAVVFGRRR ELSLEATAPC  300
S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B7e-2169154679Disease resistance protein RRS1
5w3x_D7e-2169154679Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00167DAPTransfer from AT1G29280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo001930.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586170.0KU058617.1 UNVERIFIED: Panicum miliaceum WRKY12-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817654.10.0probable WRKY transcription factor 65
TrEMBLA0A1E5VH260.0A0A1E5VH26_9POAL; Putative WRKY transcription factor 65
STRINGPavir.Eb03138.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP70883651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.15e-35WRKY DNA-binding protein 65