PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do001906.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | GATA | ||||||||
Protein Properties | Length: 233aa MW: 24242.2 Da PI: 7.6221 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 57.1 | 2.4e-18 | 137 | 170 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C++C + +Tp+WR+gp g++tLCnaCG+++++ + Do001906.1 137 CTHCASEETPQWRQGPAGPSTLCNACGVRFKSGR 170 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 12.018 | 131 | 167 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 1.6E-15 | 131 | 185 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.95E-14 | 134 | 195 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 3.2E-14 | 135 | 168 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 4.4E-16 | 137 | 170 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 137 | 162 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 8.70E-16 | 137 | 185 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MTAAATMAGG GAADENPAAA DALAAGADAS LNAFFDHAGL ELVAAGGGQG SEEEEELEWL 60 SNMDAFPSVE TMAVEVEAAP SRPEAGVGRL EALPHVVGPR TKGLRRRRRV MAPWSLPPVL 120 PPRPPPAGGG AAPRRRCTHC ASEETPQWRQ GPAGPSTLCN ACGVRFKSGR LFPEYRPINS 180 PTFSPLLHSN SHRRVLEMRH HVEEETAAGG GHAGASARRA ERAAARAAAA GGK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do001906.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT018418 | 4e-94 | BT018418.1 Zea mays clone EL01N0356F04.d mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004987179.1 | 2e-88 | GATA transcription factor 7 | ||||
Swissprot | O65515 | 1e-31 | GATA7_ARATH; GATA transcription factor 7 | ||||
TrEMBL | A0A1E5W7U8 | 1e-163 | A0A1E5W7U8_9POAL; GATA transcription factor 1 | ||||
STRING | Pavir.J23680.1.p | 8e-80 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5962 | 36 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24050.1 | 2e-32 | GATA transcription factor 1 |
Publications ? help Back to Top | |||
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