PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do001819.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | WOX | ||||||||
Protein Properties | Length: 168aa MW: 19125.7 Da PI: 9.746 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63.7 | 2.7e-20 | 29 | 88 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R++++++q+++Le l++ r+p+ ++e+++++l +++ ++V++WFqN++a+e++ Do001819.1 29 TRWNPSPDQIKVLEMLYRGgMRTPNSFQIEQITEELgkygRIEGKNVFYWFQNHKARERQ 88 8*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 115.8 | 2.1e-37 | 28 | 90 | 3 | 65 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +tRW+P+p+Qik+Le+ly+ G+rtPn+ +i++it+eL +yG+ie+kNVfyWFQN+kaRerqkq Do001819.1 28 TTRWNPSPDQIKVLEMLYRGGMRTPNSFQIEQITEELGKYGRIEGKNVFYWFQNHKARERQKQ 90 79***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 9.928 | 24 | 89 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.8E-7 | 26 | 93 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.71E-13 | 27 | 94 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.12E-5 | 29 | 90 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.6E-8 | 29 | 88 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 6.1E-18 | 29 | 88 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0007165 | Biological Process | signal transduction | ||||
GO:0010067 | Biological Process | procambium histogenesis | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence Send to blast |
MVVLPEFARV RNASRLLNCT VQVPTAGTTR WNPSPDQIKV LEMLYRGGMR TPNSFQIEQI 60 TEELGKYGRI EGKNVFYWFQ NHKARERQKQ KRAALLTLST TSSLPPAETK DGVEKKKEAY 120 EDASRRKRRC RTWGDVHGDG ATTEVVAECT DDVTLELFPL RPDQGKAN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 114 | 128 | KKKEAYEDASRRKRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do001819.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT035518 | 1e-93 | BT035518.1 Zea mays full-length cDNA clone ZM_BFb0067L08 mRNA, complete cds. | |||
GenBank | BT085195 | 1e-93 | BT085195.1 Zea mays full-length cDNA clone ZM_BFb0326G17 mRNA, complete cds. | |||
GenBank | EU964275 | 1e-93 | EU964275.1 Zea mays clone 277479 WUSCHEL-related homeobox 4 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004977039.1 | 1e-95 | WUSCHEL-related homeobox 4 | ||||
Swissprot | Q25AM2 | 2e-78 | WOX4_ORYSI; WUSCHEL-related homeobox 4 | ||||
Swissprot | Q7XTV3 | 2e-78 | WOX4_ORYSJ; WUSCHEL-related homeobox 4 | ||||
TrEMBL | A0A1E5VX72 | 1e-123 | A0A1E5VX72_9POAL; WUSCHEL-related homeobox 4 | ||||
STRING | Si012229m | 6e-95 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12692 | 30 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G46480.1 | 2e-38 | WUSCHEL related homeobox 4 |