PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do001763.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family WRKY
Protein Properties Length: 307aa    MW: 32795.5 Da    PI: 7.2477
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do001763.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY69.26.1e-22124183359
                 -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                 Dg+ WrKYGqK+++g ++pr YYrC+++   gC+++++v+r++e+p + ei Y geH+++
  Do001763.1 124 DGFIWRKYGQKDINGYKHPRLYYRCAHRqqqGCNATRRVQRTREQPPAYEIAYYGEHTCR 183
                 9*************************998889*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.1E-23114183IPR003657WRKY domain
SuperFamilySSF1182909.81E-22118183IPR003657WRKY domain
SMARTSM007741.3E-29122184IPR003657WRKY domain
PROSITE profilePS5081119.439124180IPR003657WRKY domain
PfamPF031064.2E-23124183IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MTLDTPAAVV LELMTMGQQS AAHLGDLLRA ASPASPHQEL AAEILRCCDR VIDALRATSG  60
RKRKAAEYQA EAAPPAAGAW SPPPPPGPPP KRRRGVLTNG SGVGFRRARG AEAVKEVTSG  120
TTVDGFIWRK YGQKDINGYK HPRLYYRCAH RQQQGCNATR RVQRTREQPP AYEIAYYGEH  180
TCRGATAAAC HQLGLGGAPP PGVVDFGSNS WGSSADASAS QGGWSSSSVS ASASPSSEAG  240
FDFDFEAQTH EWKWHDTAAV DTKLVCAAPC YASDPVTEFL DGCLGWESVL NDPLDFTGLH  300
HIAATFQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A5e-191241831069OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo001763.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586301e-102KU058630.1 UNVERIFIED: Panicum miliaceum WRKY21-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970388.11e-144probable WRKY transcription factor 38
TrEMBLA0A1E5V3Y60.0A0A1E5V3Y6_9POAL; Uncharacterized protein
STRINGSi002401m1e-143(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP83223147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.11e-21WRKY DNA-binding protein 46