PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do001751.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

WRKY

Protein Properties

Length: 281aa MW: 30552 Da PI: 6.0369

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do001751.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	62.8	5.8e-20	75	136	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-S.SSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversa.edpkvveitYegeHnhe 59 Dgy+WrKYGqK ++++++pr YYrC+++ +C+++k+v++++ d+ ++Y +eH+++ Do001751.1 75 YDGYQWRKYGQKRITNTRYPRCYYRCSFHrerNCRATKQVQQCSaGDQPQYLVMYFNEHTCD 136 5************************99999****976516888999******96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.4E-23	67	137	IPR003657	WRKY domain
SuperFamily	SSF118290	3.01E-21	69	137	IPR003657	WRKY domain
SMART	SM00774	1.6E-30	74	137	IPR003657	WRKY domain
PROSITE profile	PS50811	16.409	76	138	IPR003657	WRKY domain
Pfam	PF03106	1.8E-21	76	136	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MQAKSRLTVS GGGSSSVSDD EQQHEAVIRE LTRGHELTAR LRAEALRALR GQGQTEATAA 60 LILQEVQTVT SSPHYDGYQW RKYGQKRITN TRYPRCYYRC SFHRERNCRA TKQVQQCSAG 120 DQPQYLVMYF NEHTCDTAAW EPEAAASASA ANLAVLDMSV ARLVARRGGG LLDERGVQEE 180 HERQVLVSSL ACVLGGHQFH HSPDAAVPVN VQAQAAEPPQ RARTRDAPAP AAASAVVDAP 240 AAEMPRLDVD VVGLDVMDYD VTGELCFGDS YGLPDGGGLP F

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6ir8_A	6e-12	76	135	10	68	OsWRKY45
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do001751.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT063861	9e-68	BT063861.1 Zea mays full-length cDNA clone ZM_BFc0113G18 mRNA, complete cds.
GenBank	EU956487	9e-68	EU956487.1 Zea mays clone 1564344 WRKY DNA binding domain containing protein mRNA, complete cds.
GenBank	JX469948	9e-68	JX469948.1 Zea mays subsp. mays clone UT3209 WRKY-type transcription factor mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004970387.1	1e-123	probable WRKY transcription factor 4
TrEMBL	K3XJP8	1e-121	K3XJP8_SETIT; Uncharacterized protein
STRING	Si002121m	1e-122	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12538	28	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66600.1	2e-15	ABA overly sensitive mutant 3