PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do001726.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB_related
Protein Properties Length: 266aa    MW: 27743.2 Da    PI: 8.3781
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do001726.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.48.1e-14110154347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +W++eE+ l++++ ++lG g+W+ I+r + ++Rt+ q+ s+ qk+
       Do001726.1 110 PWSEEEHRLFLEGLEKLGRGDWRGISRGFVTTRTPTQVASHAQKF 154
                      8******************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.898103159IPR017930Myb domain
SuperFamilySSF466894.49E-17105160IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-17106158IPR006447Myb domain, plants
SMARTSM007176.6E-11107157IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-10107150IPR009057Homeodomain-like
PfamPF002494.7E-11110153IPR001005SANT/Myb domain
CDDcd001674.43E-10110155No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MRCGGGAAAG LRLFGVQLGA AAAAAAGGFA SPASLQLHKS YSVDCLNHLQ GSAPAYALVA  60
APLLLSPSPP SALLLSIDEC STERGGGGGY LSDDGARGGT ALRERKKGVP WSEEEHRLFL  120
EGLEKLGRGD WRGISRGFVT TRTPTQVASH AQKFFLRQNS TGKKSSAKRR SSLFDMVQNC  180
ESGLVSDPSD GKAAAAGTSE SLSPKASCDV YRKESTGIHE RMMRPSSESA SVSEAVTPMT  240
EQAHGYHCSP LNLELGMSLS TPSIGT
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo001726.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961036.31e-142transcription factor SRM1
TrEMBLA0A1E5VQ370.0A0A1E5VQ37_9POAL; Transcription factor DIVARICATA
STRINGPavir.J35324.1.p1e-153(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49323066
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.17e-35MYB_related family protein