PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do001560.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | WRKY | ||||||||
Protein Properties | Length: 220aa MW: 23952.5 Da PI: 8.7763 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 67.7 | 1.7e-21 | 30 | 91 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnhe 59 +Dg++WrKYG K++++++fpr YYrCt++ +Cp++k+v+++ ++dp + +tY +eH ++ Do001560.1 30 NDGHQWRKYGEKKINNTNFPRYYYRCTYKdnmNCPATKQVQQKdHSDPPLYAVTYYNEHSCN 91 8***************************99999*******8752679************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.2E-23 | 16 | 91 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.26E-22 | 23 | 91 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 16.536 | 24 | 93 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.5E-31 | 29 | 92 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.6E-25 | 30 | 90 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MSPAPSSHQS QINSRKEKRM RKVDTFAPHN DGHQWRKYGE KKINNTNFPR YYYRCTYKDN 60 MNCPATKQVQ QKDHSDPPLY AVTYYNEHSC NSAFLPLSPS EFQLQTSSGK AVSICFDSSS 120 GAAAQEPPSA AAAAAATNAS GGSPSSSAAA RRGTPPEIRN PPVLRRSETY PWGAGAVVEQ 180 QKPASCSTEC HDAFSGGAVA VPEEVVDAGR FGSIRFFHFL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 2e-14 | 30 | 90 | 9 | 68 | OsWRKY45 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do001560.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KU058623 | 0.0 | KU058623.1 UNVERIFIED: Panicum miliaceum WRKY6-like gene, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025792602.1 | 1e-143 | probable WRKY transcription factor 35 | ||||
TrEMBL | A0A1E5V7P7 | 1e-163 | A0A1E5V7P7_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ib01500.1.p | 1e-135 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2032 | 35 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46400.1 | 9e-19 | WRKY DNA-binding protein 46 |