PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do001547.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

C2H2

Protein Properties

Length: 354aa MW: 38591.9 Da PI: 5.4757

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do001547.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.5	0.00095	209	231	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+Cp Cg+ F + L H +H Do001547.1 209 YECPGCGRAFQSYQALGGHRASH 231 99********9999888888777 PP
2	zf-C2H2	11	0.0013	290	312	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C k+F + L H r+H Do001547.1 290 FECPICFKVFGSGQALGGHKRSH 312 89**************9999999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.23E-6	208	231	No hit	No description
Pfam	PF13912	6.8E-11	208	233	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.21	209	231	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.492	209	236	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	211	231	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.23E-6	285	312	No hit	No description
SMART	SM00355	0.15	290	312	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.889	290	313	IPR007087	Zinc finger, C2H2
Pfam	PF13912	3.2E-11	290	313	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	292	312	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MRSHSLAEVE TAVEDDADGD GEEQQQRRGS DCLMAPGAGG YGLRENPKKT RRLSGLDGGD 60 DESGGVQGEC RHGDLISPCA PEVEAEREQE DTMLIPTEPA VGLMPAPRRR RRSMRVPAPA 120 PPPAFDKEPE DVALCLIMLS RDILDRRGSM VTGTEYSPEK DRRRRHYHHD TDSDDASALF 180 HCSDIETSTK INKRKPNRSL AGDEKRTRYE CPGCGRAFQS YQALGGHRAS HKRINSNCSI 240 VKTVPDQPEP SVETNASFST ASPDIEYSAD IANNTAVMAL KAKPLKAIKF ECPICFKVFG 300 SGQALGGHKR SHSIAGELYE RAHADRNTGI DEAEQPVVAD GFLDLNLPAP GADD

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MRSHSLAEVE TAVEDDADGD GEEQQQRRGS DCLMAPGAGG YGLRENPKKT RRLSGLDGGD  60
DESGGVQGEC RHGDLISPCA PEVEAEREQE DTMLIPTEPA VGLMPAPRRR RRSMRVPAPA  120
PPPAFDKEPE DVALCLIMLS RDILDRRGSM VTGTEYSPEK DRRRRHYHHD TDSDDASALF  180
HCSDIETSTK INKRKPNRSL AGDEKRTRYE CPGCGRAFQS YQALGGHRAS HKRINSNCSI  240
VKTVPDQPEP SVETNASFST ASPDIEYSAD IANNTAVMAL KAKPLKAIKF ECPICFKVFG  300
SGQALGGHKR SHSIAGELYE RAHADRNTGI DEAEQPVVAD GFLDLNLPAP GADD

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do001547.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025792036.1	0.0	zinc finger protein ZAT4-like
TrEMBL	A0A1E5V146	0.0	A0A1E5V146_9POAL; Uncharacterized protein
STRING	Pavir.Ia03028.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3861	35	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45120.1	3e-23	C2H2-like zinc finger protein