PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do001534.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family NAC
Protein Properties Length: 289aa    MW: 30724.4 Da    PI: 9.408
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do001534.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM141.64.6e-44141581128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdL.pkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk... 95 
                 lppGfrF+Ptdeelvv+yL++++ +++l+++  i++++i+ ++P+dL p     +e+e yfF++++ ky +g+r+nrat +gyWkatgk+k+v ++   
  Do001534.1  14 LPPGFRFRPTDEELVVHYLRRRALASPLPAAVDIPDIRILAHDPSDLlP--PGWSEQERYFFTCKEAKYVKGRRANRATGAGYWKATGKEKPVAVTvpa 110
                 79***************************9666**************43..3447899************************************99888 PP

         NAM  96 ............kgel.....vglkktLvfykgrapkgektdWvmheyrl 128
                             +  +     vg+k++Lvfy+g+ p+g+ktdWvmheyrl
  Do001534.1 111 pappkggapghaQ--QgqavlVGMKRSLVFYRGKPPTGSKTDWVMHEYRL 158
                 8888877776551..155566***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.89E-489190IPR003441NAC domain
PROSITE profilePS5100546.83714190IPR003441NAC domain
PfamPF023653.4E-2615158IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MEVVKEAGVA KPRLPPGFRF RPTDEELVVH YLRRRALASP LPAAVDIPDI RILAHDPSDL  60
LPPGWSEQER YFFTCKEAKY VKGRRANRAT GAGYWKATGK EKPVAVTVPA PAPPKGGAPG  120
HAQQGQAVLV GMKRSLVFYR GKPPTGSKTD WVMHEYRLAG AGLAPCRRAA GGDAAATPAE  180
GWVLCRVFRK KGSASANAAA ANAASPGDRS DGEAEEEEEA GGAEEAAEGG RTFIDFFARA  240
DAAGRRQQQA QGQAEQQRRA ASPVVSSSCL TDEQHGGPRG EQETTSRGA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-381419417169NO APICAL MERISTEM PROTEIN
1ut4_B5e-381419417169NO APICAL MERISTEM PROTEIN
1ut7_A5e-381419417169NO APICAL MERISTEM PROTEIN
1ut7_B5e-381419417169NO APICAL MERISTEM PROTEIN
4dul_A5e-381419417169NAC domain-containing protein 19
4dul_B5e-381419417169NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo001534.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0939165e-91FP093916.1 Phyllostachys edulis cDNA clone: bphyem121f24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809222.11e-125NAC domain-containing protein 83
TrEMBLA0A1E5VY720.0A0A1E5VY72_9POAL; NAC domain-containing protein 83
STRINGPavir.Cb00769.1.p1e-123(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63173254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.15e-43NAC domain containing protein 83