PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do001526.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family AP2
Protein Properties Length: 816aa    MW: 84468.4 Da    PI: 9.0215
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do001526.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.19.4e-1346102155
         AP2   1 sgykGVrwdkkrgr......WvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                 + ++GVr++   gr      Wv+e+r+p   g +  r +lg+f+ ae Aa+a++aa+++++g
  Do001526.1  46 PVFRGVRRRG--GRagrpwrWVCEVRVP---GrRGCRLWLGTFDAAEAAARAHDAAMLAIRG 102
                 579***6543..44456*99*******9...6445************************998 PP
2AP256.66.3e-18627679155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                 + ++GVr++ + grWv+e+r+p   g +  r ++g+f+tae Aa+a++aa+++l g
  Do001526.1 627 PVFRGVRRRGRAGRWVCEVRVP---GsRGDRLWVGTFDTAEAAARAHDAAMLALCG 679
                 579******************9...5445***********************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.8E-846102IPR001471AP2/ERF domain
SuperFamilySSF541713.47E-1247116IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.1E-2247117IPR001471AP2/ERF domain
SMARTSM003806.5E-1147121IPR001471AP2/ERF domain
PROSITE profilePS5103219.53347115IPR001471AP2/ERF domain
PfamPF008474.8E-13627679IPR001471AP2/ERF domain
SuperFamilySSF541715.89E-18628689IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.1E-27628689IPR001471AP2/ERF domain
SMARTSM003806.1E-21628693IPR001471AP2/ERF domain
PROSITE profilePS5103220.758628687IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 816 aa     Download sequence    Send to blast
MMCQLKQESG SCESATSSAA STPSSSSAVR AKRPAGRTKF RETRHPVFRG VRRRGGRAGR  60
PWRWVCEVRV PGRRGCRLWL GTFDAAEAAA RAHDAAMLAI RGACGAAAAR CLNFPDSAWL  120
LDVPPRAALR GTEVDVRRAV ARAVEAFLRL RPHVEDAMSG TSEAPAAGEN DDAATEADAS  180
SAKSDEATSP FEMDVLSDMG AGLYYASMAQ GLLDEATSPF EMDVLSDMGA GLYYASMAQG  240
LLMDPPASDG SCCDDADCDA ATVAIAAASR PLPQLSVEAS GWIKLTLCIY RAATRVSTCP  300
RNGQLLQRLF FSFPRPPPPL AHPLCAPRRL PPPRAPPPLP RRRGGGEGVV AAAAEDIGAA  360
RAGRVRPVAV VRAAASGGFY TGGTAQRRSA WSGVRARGVG TGGGGGGARG VRRGGSGAAA  420
RGRSGGRRHA AGVGAVGAAR EAAVAVVVRP GCPSPPRRQP APAPHPATRT TPGSAPPGSA  480
PRRLTPRRRH TVESRGEAAR GSGDALGAGS GGGGRCSSSR RTSSAAGEEQ RSGNLQVAAE  540
AMRGRMGDEA TFNVCIYVSA DCSPSPGPRS NSEQQVGSSS SSMDYFKSAT GTEAPGSTSA  600
EERAGSGQPS PPKRPAGRTK FQETRHPVFR GVRRRGRAGR WVCEVRVPGS RGDRLWVGTF  660
DTAEAAARAH DAAMLALCGA AARLNFPDSA WLLDVPRAAT SNAPAELPPL PDVQRAATEA  720
VAGFLRRHGG DAPAGDAASP QRTRNAASSS ATVETPATGS VLDNGSMLEL DVFGGMDAGS  780
YYASLAEGLL IDPPPTSVEC PEEDEDCDAG EVELWS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo001526.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ1804715e-53JQ180471.1 Brachypodium distachyon CBF5 (CBF5) gene, complete cds; CBF6 pseudogene and retrotransposon, complete sequence; and CBF7 (CBF7) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820831.15e-94dehydration-responsive element-binding protein 1J-like
SwissprotA2YXQ72e-61DRE1J_ORYSI; Dehydration-responsive element-binding protein 1J
TrEMBLA0A1E5W1J20.0A0A1E5W1J2_9POAL; Dehydration-responsive element-binding protein 1J
STRINGPavir.Fa00114.1.p2e-76(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.18e-18C-repeat-binding factor 4