PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do001411.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | ERF | ||||||||
Protein Properties | Length: 199aa MW: 20626.7 Da PI: 9.7343 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.7 | 6.8e-19 | 4 | 54 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr ++ +gr++AeIrdp r +r++lg+f+tae Aa+a++ a++ ++g Do001411.1 4 PRFRGVRKRP-WGRYAAEIRDP---A-RkARVWLGTFDTAEAAARAYDTAALHFRG 54 689*******.**********8...2.35***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 9.5E-13 | 4 | 54 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.01E-21 | 4 | 64 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.3E-31 | 5 | 62 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.5 | 5 | 62 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.32E-22 | 5 | 63 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.7E-36 | 5 | 68 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-10 | 6 | 17 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-10 | 28 | 44 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MMEPRFRGVR KRPWGRYAAE IRDPARKARV WLGTFDTAEA AARAYDTAAL HFRGPKAKTN 60 FPVAFAAGAH PLPPPPKMML AAVSPSSSTV ESSSRDSPAA SPVAHALPAP SLDLSLGMPA 120 MVAAQPFLFL DPRLAVTVAV PAPVPCRPAA VVVAGANKKA ATCREDEQSD TGSSSSVVDA 180 SPAVGVGLDL NLPPPAEVA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-21 | 5 | 69 | 14 | 79 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do001411.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT018001 | 1e-160 | BT018001.1 Zea mays clone EL01N0526G07.c mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025823499.1 | 2e-90 | ethylene-responsive transcription factor 4-like | ||||
TrEMBL | A0A1E5UZX7 | 1e-136 | A0A1E5UZX7_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ga00485.1.p | 2e-85 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11853 | 25 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15210.1 | 1e-22 | ethylene responsive element binding factor 4 |