PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do001398.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

NAC

Protein Properties

Length: 310aa MW: 34268.8 Da PI: 8.2165

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do001398.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	146.2	1.7e-45	21	152	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkya.....tgkrknratksgyWkatgkdkevlsk. 95 pGfrFhPt+eel+ +yLk+ ++gkkl++ ++i++v++y+++Pw+Lp ++ +e+ewyfF++rd+k+a g r++r+t++g+Wkatg+d++v ++ Do001398.1 21 PGFRFHPTEEELLEFYLKQVAHGKKLKF-DIIPTVHLYRHDPWELPGLARIGEREWYFFVPRDRKQAggggcGGGRPSRTTERGFWKATGSDRAVRCAn 118 9************************9.99***********8778899*********966555566*****************986 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++l+glkktLv+y+grap+g+ktdWvm+eyrl Do001398.1 119 dPKRLIGLKKTLVYYEGRAPRGTKTDWVMNEYRL 152 66777*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	52.797	19	180	IPR003441	NAC domain
SuperFamily	SSF101941	1.57E-52	20	180	IPR003441	NAC domain
Pfam	PF02365	6.9E-24	21	152	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MERRSASSGG GGCGAAELEL PGFRFHPTEE ELLEFYLKQV AHGKKLKFDI IPTVHLYRHD 60 PWELPGLARI GEREWYFFVP RDRKQAGGGG CGGGRPSRTT ERGFWKATGS DRAVRCANDP 120 KRLIGLKKTL VYYEGRAPRG TKTDWVMNEY RLPDGAADSS SSGSSAAHKE DIVLCKIYRK 180 AVSLKELEQR VAMEELARAS ATPSASHNTG SPADSVSSSD QDAVVHQHQQ GDISMMMGIP 240 PASICMKKEV LAESSTPAVL RPATLSLPQL DVAKQPAQQQ EWMQDPFLTQ LRSPWMESWS 300 PYFASSVLNF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	7e-47	16	180	11	168	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269\|PubMed:26834774}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do001398.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269\|PubMed:26834774}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004966508.1	1e-169	NAC domain-containing protein 67
Swissprot	Q10S65	2e-99	NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBL	A0A1E5VRV7	0.0	A0A1E5VRV7_9POAL; NAC domain-containing protein 35
STRING	Si006994m	1e-169	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1770	38	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17040.1	2e-76	NAC domain containing protein 36

Publications ? help Back to Top
Hong Y,Zhang H,Huang L,Li D,Song F Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice. Front Plant Sci, 2016. 7: p. 4 [PMID:26834774]