PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do001321.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family WRKY
Protein Properties Length: 234aa    MW: 24919.1 Da    PI: 9.4212
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do001321.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.74.4e-32147205159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 ldDgy+WrKYGqK vk+s++prsYYrCt+++C+vkk+v+r a+d+ +v++tYeg Hnh+
  Do001321.1 147 LDDGYRWRKYGQKAVKNSKYPRSYYRCTHHTCNVKKQVQRLARDEGIVVTTYEGVHNHP 205
                 59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.4E-33133205IPR003657WRKY domain
SuperFamilySSF1182901.06E-28139206IPR003657WRKY domain
PROSITE profilePS5081128.862142207IPR003657WRKY domain
SMARTSM007741.1E-37147206IPR003657WRKY domain
PfamPF031061.4E-25148205IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MENSSHRGGQ QSNPQLLPRY LAPAVAAAAA PQLEHQQTCT TNAMALGNLG ALSCPPALVD  60
WASLLLPHSP GPLLQAGAPQ HAVAGAGGEV ESGGDHLVAV TGGSGSSSTA AGDGDKATKD  120
GKGGGRGKKK ASRPRFAFQT RSETDILDDG YRWRKYGQKA VKNSKYPRSY YRCTHHTCNV  180
KKQVQRLARD EGIVVTTYEG VHNHPCEKLM EALSPILKQL QLLSQLQCTT NQLI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-25138204874Probable WRKY transcription factor 4
2lex_A1e-25138204874Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo001321.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9580741e-123EU958074.1 Zea mays clone 1671428 WRKY23 - superfamily of TFs having WRKY and zinc finger domains mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806667.11e-87probable WRKY transcription factor 48
TrEMBLA0A1E5VSD31e-172A0A1E5VSD3_9POAL; Putative WRKY transcription factor 56
STRINGGRMZM2G015433_P011e-80(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP110038133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64000.18e-48WRKY DNA-binding protein 56