PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do001176.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

MYB_related

Protein Properties

Length: 605aa MW: 66019.9 Da PI: 9.5424

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do001176.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23	1.9e-07	503	552	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r++++ E e lv+av+qlG+g+W+ + + +Rt ++k++w ++ Do001176.1 503 RMPFSVGEVEALVEAVEQLGTGRWRDVKMHAFdgaDHRTYVDLKDKWKTL 552 7899999******************9999899***********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	15.733	498	557	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.4E-9	499	554	IPR009057	Homeodomain-like
SMART	SM00717	6.4E-7	502	555	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	8.27E-15	505	585	IPR009057	Homeodomain-like
CDD	cd11660	1.68E-16	505	554	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 605 aa Download sequence Send to blast
MVAQKRLGYG SRGRQIPAMP RVPNSVRGKC TTRRKKNEMC AFDLLATIAG TLLEDQDSSP 60 NVLNTSGAAI SYTRNRKSVK EEYFDEILPL RNVAVRKGCC SGCGSGGVSA LPRQVNDCLA 120 ENSSTRNEAE SVLESLTVKS NMLVRNSSVR CARPCEISRG LGIIREYGAS GVRGPGSSSS 180 AEAGQAHQAE PKMIRRQADR HAAALDSLFA SVDLDGRPPA LVTSDSSSGV LLCSHDKEHK 240 ATSLCQVEVQ HTADRDDDER FSGCTHPSTT GNEGYKPHYV GNHRIRKLLA SKVRKGAHNK 300 SCRGMSNKGS KLNFCGKKIP TARQKVQRTN FKRKKLARGT TPFAKGMLAG ASGTSFTTEG 360 QNKSCGSEDY HVKLRIKSFN IPELFVEIPE TATIGSLKQD SSSGVIIPEE MDFISADIVE 420 QLARIKYEEP FPETKVGGNQ KPIQAYLNGS LTGCVHHSVE MTSQDTSASL QAIIPVAASD 480 LNALAIVPIC KTRRSEIGQR RTRMPFSVGE VEALVEAVEQ LGTGRWRDVK MHAFDGADHR 540 TYVDLKDKWK TLVHTASISP QQRRGEPVPQ ELLDRVLSAQ AYWSQQQAKF HGKAPLPEIC 600 LASKE

Sequence ? help Back to Top

Protein Sequence Length: 605 aa Download sequence Send to blast

MVAQKRLGYG SRGRQIPAMP RVPNSVRGKC TTRRKKNEMC AFDLLATIAG TLLEDQDSSP  60
NVLNTSGAAI SYTRNRKSVK EEYFDEILPL RNVAVRKGCC SGCGSGGVSA LPRQVNDCLA  120
ENSSTRNEAE SVLESLTVKS NMLVRNSSVR CARPCEISRG LGIIREYGAS GVRGPGSSSS  180
AEAGQAHQAE PKMIRRQADR HAAALDSLFA SVDLDGRPPA LVTSDSSSGV LLCSHDKEHK  240
ATSLCQVEVQ HTADRDDDER FSGCTHPSTT GNEGYKPHYV GNHRIRKLLA SKVRKGAHNK  300
SCRGMSNKGS KLNFCGKKIP TARQKVQRTN FKRKKLARGT TPFAKGMLAG ASGTSFTTEG  360
QNKSCGSEDY HVKLRIKSFN IPELFVEIPE TATIGSLKQD SSSGVIIPEE MDFISADIVE  420
QLARIKYEEP FPETKVGGNQ KPIQAYLNGS LTGCVHHSVE MTSQDTSASL QAIIPVAASD  480
LNALAIVPIC KTRRSEIGQR RTRMPFSVGE VEALVEAVEQ LGTGRWRDVK MHAFDGADHR  540
TYVDLKDKWK TLVHTASISP QQRRGEPVPQ ELLDRVLSAQ AYWSQQQAKF HGKAPLPEIC  600
LASKE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2juh_A	4e-55	491	591	5	105	Telomere binding protein TBP1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds the telomeric double-stranded 5'TTTAGGG-3' repeat and regulates telomere length and structure. {ECO:0000269\|PubMed:10811811, ECO:0000269\|PubMed:17586654}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do001176.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012701182.1	0.0	telomere-binding protein 1 isoform X1
Refseq	XP_022682806.1	0.0	telomere-binding protein 1 isoform X1
Swissprot	Q9LL45	1e-113	TBP1_ORYSJ; Telomere-binding protein 1
TrEMBL	A0A1E5WHI4	0.0	A0A1E5WHI4_9POAL; Telomere-binding protein 1
STRING	Si000591m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10824	12	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07540.1	1e-45	TRF-like 2

Publications ? help Back to Top
Yu EY, et al. Sequence-specific DNA recognition by the Myb-like domain of plant telomeric protein RTBP1. J. Biol. Chem., 2000. 275(31): p. 24208-14 [PMID:10811811] Hong JP, et al. Suppression of RICE TELOMERE BINDING PROTEIN 1 results in severe and gradual developmental defects accompanied by genome instability in rice. Plant Cell, 2007. 19(6): p. 1770-81 [PMID:17586654] Ko S, et al. Solution structure of the DNA binding domain of rice telomere binding protein RTBP1. Biochemistry, 2009. 48(5): p. 827-38 [PMID:19152316] Mukherjee K,Pandey DM,Vidyarthi AS In silico characterization and analysis of RTBP1 and NgTRF1 protein through MD simulation and molecular docking - A comparative study. Interdiscip Sci, 2015. [PMID:25663113] Mukherjee K,Pandey DM,Vidyarthi AS In Silico Characterization and Analysis of RTBP1 and NgTRF1 Protein Through MD Simulation and Molecular Docking: A Comparative Study. Interdiscip Sci, 2015. 7(3): p. 275-86 [PMID:26289405]