PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do000832.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family WRKY
Protein Properties Length: 608aa    MW: 65073.2 Da    PI: 6.584
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do000832.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.93.7e-32230287260
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                 +DgynWrKYGqK+vkgse+prsYY+Ct+++C+vkk +ers  d++++e++Y+g+Hnh+k
  Do000832.1 230 EDGYNWRKYGQKHVKGSENPRSYYKCTHPNCEVKKLLERSL-DGQITEVVYKGRHNHPK 287
                 8****************************************.***************85 PP
2WRKY107.46.9e-34403461159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 ldDgy+WrKYGqK+vkg+++prsYY+Ct++gCpv+k+ver+++dpk v++tYeg+Hnhe
  Do000832.1 403 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHTGCPVRKHVERASHDPKSVITTYEGKHNHE 461
                 59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.6E-28220288IPR003657WRKY domain
PROSITE profilePS5081123.801224288IPR003657WRKY domain
SuperFamilySSF1182909.02E-25228288IPR003657WRKY domain
SMARTSM007743.6E-35229287IPR003657WRKY domain
PfamPF031062.1E-24230286IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.0E-38388463IPR003657WRKY domain
SuperFamilySSF1182905.89E-30395463IPR003657WRKY domain
PROSITE profilePS5081138.297398463IPR003657WRKY domain
SMARTSM007746.5E-40403462IPR003657WRKY domain
PfamPF031061.3E-26404461IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009961Biological Processresponse to 1-aminocyclopropane-1-carboxylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 608 aa     Download sequence    Send to blast
MADSPNPSSG DLPAGAGGSP EKPVLTDRRV AALAGAGARY KAMSPARLPI SREPCLTIPA  60
GFSPGALLES PVLLNNFKVE PSPTTGTLSM AAIINKSTHL DILPSPRDKS AGSGHEDGGS  120
QDFEFKPHLN SQSAGPAVND PNHHDTSMKN HSLNHAPSSG NLMTENKSLC SRESIHTANV  180
SSVPNQPVAI VGPSDSMPAE VGTSEMNQMN SSENAAQETQ SENVAEKSAE DGYNWRKYGQ  240
KHVKGSENPR SYYKCTHPNC EVKKLLERSL DGQITEVVYK GRHNHPKPQP NRRLAAGAVP  300
SSQGEERYDG VTPVEDKPSN IYPNLCNQVH SAGMIDSVPG PASDDDGDGG GGRPYPGDDT  360
NEDDDLDSKR RKMESAGIDA ALMSKPNREP RVVVQTVSEV DILDDGYRWR KYGQKVVKGN  420
PNPRSYYKCT HTGCPVRKHV ERASHDPKSV ITTYEGKHNH EVPASRNASH EMSTAPMKPV  480
VHPINSNMPG LGGMMRACDA RAFTNQYSQA AESDTISLDL GVGISPNHSD ATNQMQPSVP  540
EPMQYQMQHM APVYGSMGLP GMPVPTVPGN AASSIYGSRE EKGNEGFTFK AAPANLCYSS  600
AGNLVMGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-36230464878Probable WRKY transcription factor 4
2lex_A3e-36230464878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in starch synthesis (PubMed:12953112). Acts as a transcriptional activator in sugar signaling (PubMed:16167901). Interacts specifically with the SURE and W-box elements, but not with the SP8a element (PubMed:12953112). {ECO:0000269|PubMed:12953112, ECO:0000269|PubMed:16167901}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00455DAPTransfer from AT4G26640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo000832.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by sugar. {ECO:0000269|PubMed:12953112}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0548880.0BT054888.1 Zea mays full-length cDNA clone ZM_BFc0109P23 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021310435.10.0WRKY transcription factor SUSIBA2-like isoform X1
SwissprotQ6VWJ60.0WRK46_HORVU; WRKY transcription factor SUSIBA2
TrEMBLA0A1E5VF450.0A0A1E5VF45_9POAL; WRKY transcription factor SUSIBA2
STRINGSi029245m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67403851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.21e-119WRKY family protein