PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do000746.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family GRAS
Protein Properties Length: 479aa    MW: 51121.7 Da    PI: 6.4613
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do000746.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3366.5e-103674351374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlsel.aspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                 lv+lL++c  a+++gd ++a++ L++ +   a+ +  + + R+a++f+ ALa+rl+      y + +ps+++       + +++ f+++ P+l+f+h t
  Do000746.1  67 LVHLLVTCTGAIQAGDYSAAHTNLTEARAAlAAITTsTGIGRVAKHFVDALAQRLFP----AYLQAAPSPAA------PTEVHNHFNDAGPYLRFAHST 155
                 68************************9998755555599*****************9....44333444443......3455667************** PP

        GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                 aNqaIl+a+eg+++vHi+D+ i+qGlQWpaL++aL+sR +gpp+lRiTg+g       +el e+g rL++f ++ gvpf f+ + +++l+ l+ ++L +
  Do000746.1 156 ANQAILDAFEGCDCVHIVDLAIMQGLQWPALIHALSSRGGGPPHLRITGIGG----AGDELGEVGFRLEEFTRSQGVPFTFREVRVDQLDGLREWMLGI 250
                 ****************************************************....99***************************************** PP

        GRAS 197 kpgEalaVnlvlqlhrlldesvsles...erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres...eerikvErel 289
                  pgEala n++lqlhrll ++ + +    ++d++L+lv sl+P+v++vveqeadhn+++++erf++a+ +y ++fds+ea  +r s   ++ + v +++
  Do000746.1 251 VPGEALAFNSILQLHRLLVDPDADPAvpaPIDTLLHLVTSLQPRVFTVVEQEADHNRPTLVERFTNAIFHYGSMFDSMEAM-SRRSgggSTTSAVAEAY 348
                 *****************9665554444449************************************************999.56555889999999999 PP

        GRAS 290 lgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 l+ ei ++++ eg++r erhe +++W+erl +aG+++vp++ +++  ak+ l +    + g+ + e  gsl l W+drpL++++aWr
  Do000746.1 349 LRAEILDIISGEGSARAERHEPMGRWHERLARAGLTQVPFGLDEVRLAKAHLTRATfsGSGFGILECAGSLALAWHDRPLYAATAWR 435
                 *********************************************9999999987744677*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098551.19841413IPR005202Transcription factor GRAS
PfamPF035142.3E-10067435IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MDPAAAAAPL TGNLPPQFPA AAANGVVYCL DPALFASIMR LGRQPGAPTA AEVARQRQEE  60
EDAGIRLVHL LVTCTGAIQA GDYSAAHTNL TEARAALAAI TTSTGIGRVA KHFVDALAQR  120
LFPAYLQAAP SPAAPTEVHN HFNDAGPYLR FAHSTANQAI LDAFEGCDCV HIVDLAIMQG  180
LQWPALIHAL SSRGGGPPHL RITGIGGAGD ELGEVGFRLE EFTRSQGVPF TFREVRVDQL  240
DGLREWMLGI VPGEALAFNS ILQLHRLLVD PDADPAVPAP IDTLLHLVTS LQPRVFTVVE  300
QEADHNRPTL VERFTNAIFH YGSMFDSMEA MSRRSGGGST TSAVAEAYLR AEILDIISGE  360
GSARAERHEP MGRWHERLAR AGLTQVPFGL DEVRLAKAHL TRATFSGSGF GILECAGSLA  420
LAWHDRPLYA ATAWRVTGGN AAGAVAVADT EGRDNRRRRC RNSRYGGGES SGRGNWAAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-51484342378Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo000746.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821834.10.0DELLA protein SLR1-like
TrEMBLA0A1E5VT910.0A0A1E5VT91_9POAL; DELLA protein GAI1
STRINGPavir.Aa01633.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99838138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.15e-78RGA-like 1