PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do000686.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB_related
Protein Properties Length: 272aa    MW: 28657.1 Da    PI: 5.9713
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do000686.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.11.5e-163071346
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     ++T+eE++l+v ++++lG++ W++Ia+ ++ gRt++++k++w++
       Do000686.1 30 NFTQEEEDLIVTLHAMLGSR-WSLIANQLP-GRTDNDVKNYWNT 71
                     89******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-9835IPR009057Homeodomain-like
SuperFamilySSF466891.63E-21881IPR009057Homeodomain-like
PROSITE profilePS5129424.5322377IPR017930Myb domain
SMARTSM007178.5E-152775IPR001005SANT/Myb domain
PfamPF002495.4E-153071IPR001005SANT/Myb domain
CDDcd001672.32E-123073No hitNo description
Gene3DG3DSA:1.10.10.602.7E-203673IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
LCVLAGLKRC GKSCRLRYTN YLRPNLKHEN FTQEEEDLIV TLHAMLGSRW SLIANQLPGR  60
TDNDVKNYWN TKLSKKLRQR GIDPITHRPI ADLMHSIGAL AIRPPQPPPS SSYPPAPATP  120
LVHDVAYHAG ILHQPPPPPV KQEAVIARVD ADAPASPVAD HGQQLKWSDF LADDAEAQQI  180
LGQYHHEVTV AANGGGGGGG ILAAGSSSTG GGRACGDNGG VGGGDDGAAA FIDAILDCDK  240
ETGVDQLIAE LLADPAYYAG SSSSSSEMGW GC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-1897740108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo000686.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0854911e-160BT085491.1 Zea mays full-length cDNA clone ZM_BFc0020H06 mRNA, complete cds.
GenBankEU9670891e-160EU967089.1 Zea mays clone 299414 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002465411.11e-122myb-related protein Zm38
TrEMBLA0A1E5VWS90.0A0A1E5VWS9_9POAL; Transcription factor MYB80 (Fragment)
STRINGSb01g038250.11e-121(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118743439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56110.12e-43myb domain protein 103