PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do000661.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | NAC | ||||||||
Protein Properties | Length: 49aa MW: 5475.55 Da PI: 9.4945 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 31.4 | 5.5e-10 | 1 | 40 | 1 | 41 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiyk 41 lp GfrF+Pt+eel+ +yL++k+ + +l++ +i ++d+ + Do000661.1 1 LPIGFRFRPTNEELLLHYLRRKTLACPLPA-GIILDADLAR 40 799**********************99999.7888888765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.24E-12 | 1 | 41 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 14.159 | 1 | 49 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.7E-6 | 2 | 24 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 49 aa Download sequence Send to blast |
LPIGFRFRPT NEELLLHYLR RKTLACPLPA GIILDADLAR LSSLKTPCA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do000661.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU969970 | 6e-43 | EU969970.1 Zea mays clone 337945 NAC domain-containing protein 68 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004971124.1 | 8e-18 | NAC domain-containing protein 83-like isoform X1 | ||||
TrEMBL | A0A1E5VXP8 | 2e-26 | A0A1E5VXP8_9POAL; Uncharacterized protein (Fragment) | ||||
STRING | Pavir.Eb03721.1.p | 3e-17 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04070.1 | 7e-13 | NAC domain containing protein 47 |