PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do000478.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | YABBY | ||||||||
Protein Properties | Length: 176aa MW: 19648.7 Da PI: 9.6133 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 32.1 | 3.9e-10 | 4 | 29 | 2 | 27 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvP 27 +++ ++e+vCyv+CnfCntilav+ Do000478.1 4 QITPAPEHVCYVHCNFCNTILAVTPS 29 67789*****************9754 PP | |||||||
2 | YABBY | 77.4 | 4.5e-24 | 112 | 150 | 132 | 170 |
YABBY 132 fikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 f +eei+rikasnPdishreafs+aaknWahfP+ihfgl Do000478.1 112 FSREEIRRIKASNPDISHREAFSTAAKNWAHFPNIHFGL 150 889**********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 8.4E-7 | 9 | 27 | IPR006780 | YABBY protein |
Pfam | PF04690 | 3.0E-22 | 111 | 150 | IPR006780 | YABBY protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
MSAQITPAPE HVCYVHCNFC NTILAVTPSD LSLSICLDLS FPSSSRLPLK GKLKIKWKGK 60 GNQCTDIGKG CPSCGLIRRA LIKVMKQQFR RQAADQTINF YKHACIEMAH DFSREEIRRI 120 KASNPDISHR EAFSTAAKNW AHFPNIHFGL GPHESSKKLD EAIGAAGRPQ KVQDLY |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do000478.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006650352.1 | 4e-47 | PREDICTED: protein YABBY 2 | ||||
Swissprot | Q10FZ7 | 1e-46 | YAB2_ORYSJ; Protein YABBY 2 | ||||
TrEMBL | A0A1E5WCB8 | 1e-129 | A0A1E5WCB8_9POAL; Protein YABBY 2 | ||||
STRING | OB03G35470.1 | 2e-46 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1394 | 37 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 1e-22 | YABBY family protein |