PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do000245.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family NAC
Protein Properties Length: 389aa    MW: 42481.3 Da    PI: 4.3196
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do000245.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM92.57.1e-2927257128
         NAM  57 ewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                 ewyfF++rdkky++g+++nr+t +g+Wk+tgkd++++  +++ vg+kktL+f++g+ap+g +tdWvm eyr+
  Do000245.1   2 EWYFFCPRDKKYPNGSKTNRSTPNGFWKSTGKDRTIVL-NTRIVGMKKTLIFHEGKAPRGDRTDWVMYEYRM 72 
                 8*************************************.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100538.555195IPR003441NAC domain
SuperFamilySSF1019417.98E-36295IPR003441NAC domain
PfamPF023651.7E-13372IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MEWYFFCPRD KKYPNGSKTN RSTPNGFWKS TGKDRTIVLN TRIVGMKKTL IFHEGKAPRG  60
DRTDWVMYEY RMEDNELDVV GFSKDAYVLC KIFKKSGLGP RIGEKYGAAF NEEEWDNVNT  120
ETAFPLMPCP SSKVVGATNE PSVQHTVAST SSVMKEPHVL AVASADGLPF EFSTSSITAT  180
DELQYHTLGH NGSEMTTASC ASDALDACHP TEFGGISLET DNCVRFLSNS MGNDGGASEK  240
LADLPDISEA EAQALEMNSD YCYHELVRLV ESGGASTADN LSPGYVNTEC LNPPILFGLG  300
AGDDYLEIND LFPLGGTASF ELPAAESQFP QYPLEQCSYN ELNRPQYHNE GAFAASFAAG  360
NLIPPISCSM HDISVADVTC STNLMWNDC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-2729672166NO APICAL MERISTEM PROTEIN
1ut4_B1e-2729672166NO APICAL MERISTEM PROTEIN
1ut7_A1e-2729672166NO APICAL MERISTEM PROTEIN
1ut7_B1e-2729672166NO APICAL MERISTEM PROTEIN
4dul_A1e-2729672166NAC domain-containing protein 19
4dul_B1e-2729672166NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo000245.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM0535681e-160HM053568.1 Setaria italica NAC transcription factor gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970791.10.0NAC domain-containing protein 82
RefseqXP_004970792.10.0NAC domain-containing protein 82
RefseqXP_004970796.10.0NAC domain-containing protein 82
RefseqXP_012701858.10.0NAC domain-containing protein 82
RefseqXP_012701859.10.0NAC domain-containing protein 82
TrEMBLA0A1E5UM900.0A0A1E5UM90_9POAL; NAC domain-containing protein 78
STRINGSi001352m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47313664
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.13e-49NAC domain containing protein 2