PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do000147.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family E2F/DP
Protein Properties Length: 238aa    MW: 26897.8 Da    PI: 9.9383
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do000147.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP48.21.7e-15731222771
     E2F_TDP  27 lnevakeLvse........dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                 ++e++ eL  +        d+kn+rRR+YD++NVL al++i+k +k+ei+w+g
  Do000147.1  73 IDEICGEL--KltlngqefDEKNIRRRVYDAFNVLIALRVIAK-DKKEIKWMG 122
                 56777777..3457888889***********************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM013727.8E-953122IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023198.9E-1372122IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.14E-1175123IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.6E-1978126IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144581.07E-25127226IPR014889Transcription factor DP, C-terminal
SMARTSM011381.4E-26129232IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440744.97E-29129233No hitNo description
PfamPF087814.6E-22130227IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MAPPCGDAAA AAELTSLRTR DGAGLPPLPR RDGSGGGNAV ERDEEGDKSK TARKEKAGAH  60
RIAGWGLREY SKIDEICGEL KLTLNGQEFD EKNIRRRVYD AFNVLIALRV IAKDKKEIKW  120
MGLSNFRYEK IKKLEEAHKE LMTRIKNKKK LLQEIEKQFD DLQNIKFRNQ VLQRPAESAN  180
GICLPFLLVK ASRKARVEIE ISEDSKFAGF DFNCTPFTLH DDVSILDGIR RNSIRRAG
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo000147.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819130.11e-145transcription factor-like protein DPB
TrEMBLA0A1E5V0J61e-173A0A1E5V0J6_9POAL; Transcription factor-like protein DPB
STRINGPavir.Ea02346.1.p1e-134(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128338109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.22e-43Transcription factor DP