PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV58781.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family HD-ZIP
Protein Properties Length: 298aa    MW: 34040.1 Da    PI: 4.5497
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV58781.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.45e-1882135356
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 k++++ +eq++ Le+ F  ++++  e++ +LA++lgL+ rqV +WFqNrRa++k
  KZV58781.1  82 KKRRLLPEQVQFLEKSFDLENKLEPERKVKLANELGLQPRQVAIWFQNRRARYK 135
                 4557889**********************************************9 PP
2HD-ZIP_I/II124.16.4e-4081172192
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  ekkrrl  eqv++LE+sF+ e+kLeperKv+la+eLglqprqva+WFqnrRAR+ktkqlEk+y++Lk+++d lk++ ++L ke+e+L+ e++
   KZV58781.1  81 EKKRRLLPEQVQFLEKSFDLENKLEPERKVKLANELGLQPRQVAIWFQNRRARYKTKQLEKEYDSLKASFDLLKADYDALYKENERLKIEVH 172
                  69*************************************************************************************98775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.84E-1870139IPR009057Homeodomain-like
PROSITE profilePS5007117.08677137IPR001356Homeobox domain
SMARTSM003897.0E-1880141IPR001356Homeobox domain
CDDcd000864.39E-1682138No hitNo description
PfamPF000462.2E-1582135IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.9E-1884145IPR009057Homeodomain-like
PRINTSPR000311.4E-5108117IPR000047Helix-turn-helix motif
PROSITE patternPS000270112135IPR017970Homeobox, conserved site
PRINTSPR000311.4E-5117133IPR000047Helix-turn-helix motif
PfamPF021832.1E-15137178IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MEGGMANGLS KNERISSGAS EVLDSFWVSD SSSPSFLGST TMLNFEDMRG KNNSEKPFMS  60
KIDDKSENGN ENFDECFRQP EKKRRLLPEQ VQFLEKSFDL ENKLEPERKV KLANELGLQP  120
RQVAIWFQNR RARYKTKQLE KEYDSLKASF DLLKADYDAL YKENERLKIE VHFLEEKLPK  180
MEPFDPISPL DTQPKKPILE PNAATVMACK QEDASSSARS DVSDSDSPRY TDSVLVAEPT  240
DSSQATYASD EDDNIRRRLL PLSSCLPKLE LLPYDDLQPN SCNLGFPVQD QGTWLWQC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129137RRARYKTKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV58781.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071034.11e-121homeobox-leucine zipper protein HAT5-like
TrEMBLA0A2Z7DKJ40.0A0A2Z7DKJ4_9LAMI; Uncharacterized protein
STRINGXP_009594284.14e-95(Nicotiana tomentosiformis)
STRINGPGSC0003DMT4000454712e-95(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8252495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.11e-40homeobox 1