PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV58728.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family ERF
Protein Properties Length: 361aa    MW: 38685.2 Da    PI: 5.4273
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV58728.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.13e-20156205255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                 +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a++ a+++++g
  KZV58728.1 156 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDDAALRFRG 205
                 8********.**********7.....337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.01E-22155215No hitNo description
PfamPF008471.0E-13156205IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-32156214IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-23156214IPR016177DNA-binding domain
PROSITE profilePS5103225.699156213IPR001471AP2/ERF domain
SMARTSM003801.2E-36156219IPR001471AP2/ERF domain
PRINTSPR003678.9E-12157168IPR001471AP2/ERF domain
PRINTSPR003678.9E-12179195IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MQQLEQPDYL LSAVVAPPPT LSGYRIVSGQ RQGGELGMNS EQSSSIINTT GVETLSPVYS  60
SSSSGSWAAG QKRRRDQEGS AAAQISEQVQ MIYSGFEESS SSVKPGGSSS TTPAPTATAP  120
PPPISSSASA ATVAEQTTQP ESSTTTSHEE TGERKRYRGV RQRPWGKWAA EIRDPHKAAR  180
VWLGTFDTAE AAARAYDDAA LRFRGNRAKL NFPENVRAIP PPQSTQPTLL APTQPPSAAS  240
PTLPPAFFQS SARDYWEYSQ LLQSTADFQP QQSATLFEQM LYNSTLAGLY SDALNSSSSS  300
EPAFISQSVS TSSSSSSQAL QFSSGQNISF RPPGGDQQSQ RSNQNFPPPP WTTQQYPPSS  360
S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-22155216163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV58728.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011101230.19e-90ethylene-responsive transcription factor ABR1-like
TrEMBLA0A2Z7DFP70.0A0A2Z7DFP7_9LAMI; Uncharacterized protein
STRINGXP_009777816.16e-57(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43222140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.17e-27ethylene response factor 110