PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV58186.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family ERF
Protein Properties Length: 217aa    MW: 23547.2 Da    PI: 8.0713
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV58186.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.37.7e-183888155
         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                + y+GVr ++ +g+Wv+eIr p++   + r++lg++ +ae+Aa+a++ a+++++g
  KZV58186.1 38 PVYRGVRMRS-WGKWVSEIRQPRK---KSRIWLGTYSSAEMAARAHDVAALSIKG 88
                68*****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.7E-123888IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-313997IPR001471AP2/ERF domain
PROSITE profilePS5103222.9853996IPR001471AP2/ERF domain
SuperFamilySSF541713.99E-213997IPR016177DNA-binding domain
SMARTSM003801.5E-3639102IPR001471AP2/ERF domain
PRINTSPR003675.1E-104051IPR001471AP2/ERF domain
CDDcd000181.07E-304096No hitNo description
PRINTSPR003675.1E-106278IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MAKPPSTAAE ATGKTQNSGG DSGRICKRRE RNSGTKHPVY RGVRMRSWGK WVSEIRQPRK  60
KSRIWLGTYS SAEMAARAHD VAALSIKGSS AVLNFPQLRD TLPRPASLSP ADVQAAAAKA  120
AAMEELRPMC SSSTNSNSAA SSNSEVNTAS TDELGEIIEL PSLEGSYDSG ESGCRFPAVQ  180
TAEGWLHPPW WELDRYFYDH FLDQVAGGDS LLNSMQI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-193197673Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV58186.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022843034.12e-79dehydration-responsive element-binding protein 3-like
SwissprotQ9LYD33e-55DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A2Z7DK021e-159A0A2Z7DK02_9LAMI; Dehydration-responsive element-binding protein 3-like
STRINGXP_009596664.14e-67(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.13e-51ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]