PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV57940.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family ERF
Protein Properties Length: 904aa    MW: 100136 Da    PI: 7.1853
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV57940.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.53.3e-18732781255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                 +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa a++ a+++++g
  KZV57940.1 732 HYRGVRRRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAAVAYDTAALRFKG 781
                 7********.**********7.....337***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508968.253234IPR006594LIS1 homology motif
SuperFamilySSF1608973.27E-4649193No hitNo description
PfamPF044945.4E-4261188IPR007582TFIID subunit TAF5, NTD2 domain
CDDcd080449.61E-5062194IPR007582TFIID subunit TAF5, NTD2 domain
SMARTSM003200.027339378IPR001680WD40 repeat
SuperFamilySSF509788.43E-67341631IPR017986WD40-repeat-containing domain
PROSITE profilePS5029451.201346570IPR017986WD40-repeat-containing domain
PROSITE profilePS500828.938346379IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.103.3E-69347575IPR015943WD40/YVTN repeat-like-containing domain
PfamPF004000.0084348378IPR001680WD40 repeat
CDDcd002001.98E-60351611No hitNo description
PROSITE patternPS006780365379IPR019775WD40 repeat, conserved site
SMARTSM003204.0E-8396435IPR001680WD40 repeat
PfamPF004002.9E-6400435IPR001680WD40 repeat
PROSITE profilePS5008214.017403444IPR001680WD40 repeat
PRINTSPR003204.3E-8422436IPR020472G-protein beta WD-40 repeat
SMARTSM003207.3E-10438477IPR001680WD40 repeat
PfamPF004001.2E-8440477IPR001680WD40 repeat
PROSITE profilePS5008217.092445486IPR001680WD40 repeat
PRINTSPR003204.3E-8464478IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780464478IPR019775WD40 repeat, conserved site
SMARTSM003201.1E-10480519IPR001680WD40 repeat
PfamPF004004.2E-8481519IPR001680WD40 repeat
PROSITE profilePS5008215.889487528IPR001680WD40 repeat
PROSITE patternPS006780506520IPR019775WD40 repeat, conserved site
SMARTSM003207.7E-11522561IPR001680WD40 repeat
PfamPF004003.5E-9523561IPR001680WD40 repeat
PROSITE profilePS5008215.889529570IPR001680WD40 repeat
PRINTSPR003204.3E-8548562IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780548562IPR019775WD40 repeat, conserved site
SMARTSM0032010581620IPR001680WD40 repeat
Gene3DG3DSA:3.30.730.103.4E-31731790IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-21732790IPR016177DNA-binding domain
PfamPF008472.9E-11732781IPR001471AP2/ERF domain
PROSITE profilePS5103225.528732789IPR001471AP2/ERF domain
SMARTSM003807.2E-37732795IPR001471AP2/ERF domain
PRINTSPR003672.0E-10733744IPR001471AP2/ERF domain
CDDcd000183.69E-16740790No hitNo description
PRINTSPR003672.0E-10755771IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 904 aa     Download sequence    Send to blast
MDQEEIDRVV LAYLDKRGFK QAGLAFQQEK QHNGKGSDNS STAQIDPEIA KQILAFSEVD  60
GPAQYQEGYN QLRSWAYSSL DQYQHELVRV LYPVFVHGFM DLVAKGHISE ARVFFNSFRG  120
DHEMIHARDL QKLEGVLSPS HLEEMEFARS LRQSKVSMKI CQYSYNLLLQ YLHKSQSITM  180
LGIINEHINF QVSPGQPSSI AEDTEFVALY GSGQDAADLI NQKEIHWGLL EDSLEEKLDK  240
NGVTNVDPEK TDGELREGEL EENKKKSVDG GKQSSTLKKL KKDKVGSATT KASRSESNAV  300
SGAPHVKPEL ALPVIPPEVE HTILDDLRNR VQLSGGALPS ISFYTFINTH DGLNCASISN  360
DGSLVAGGFS DSSLKVWDMA KLGQQNEYFR LWSMNFDANL VCYKGHNYPV WDVQFSPVGH  420
YFASASHDRT ARIWSVDRIQ PLRIMAGHLS DVDCVRWHAN CNYIATGSSD KTVRLWDVQS  480
GECVRVFVGH RSMILSLAMS SDGRYMASGD EDGTIMMWDL ASGRCISPLV GHNSCVWSLS  540
FSCEGSLLAS GSADCTVKIW DVSASSKVAK NEENKSGSTN RLRSLKTLPT KSTPVYALQF  600
SRRNLLFAAG ALSKHFSLFK QLKITKAKTV DSRNGKRPFS SDEPKAKEEH DHHHDIQESL  660
FPAYSARSLQ DMSAIVSVLS QVIGSTGENQ DPSDSVGDNL ATLPANLQST VPAPVQQNQS  720
QVIHGKGQRR RHYRGVRRRP WGKWAAEIRD PHKAARVWLG TFDTAEAAAV AYDTAALRFK  780
GSKAILNFPE RVLAKSEFGY VTSDDRPNSY LNAHPYPQIM QGSHIPSSSE VYNNIGGSFV  840
SRSPSSFTAP LLSSAVAPDH HQQLLQEQNF MRFGLSFGNS SSSSSSSSSF PTTGENWAEK  900
KSRT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6f3t_A1e-105476134606Transcription initiation factor TFIID subunit 5
6f3t_B1e-105476134606Transcription initiation factor TFIID subunit 5
6f3t_C1e-105476134606Transcription initiation factor TFIID subunit 5
6f3t_D1e-105476134606Transcription initiation factor TFIID subunit 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV57940.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012833530.10.0PREDICTED: transcription initiation factor TFIID subunit 5
SwissprotQ6S7B00.0TAF5_ARATH; Transcription initiation factor TFIID subunit 5
TrEMBLA0A2Z7DDP60.0A0A2Z7DDP6_9LAMI; Uncharacterized protein
STRINGMigut.N00603.1.p0.0(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07310.13e-31ERF family protein
Publications ? help Back to Top
  1. Lago C,Clerici E,Mizzi L,Colombo L,Kater MM
    TBP-associated factors in Arabidopsis.
    Gene, 2004. 342(2): p. 231-41
    [PMID:15527982]
  2. Lawit SJ,O'Grady K,Gurley WB,Czarnecka-Verner E
    Yeast two-hybrid map of Arabidopsis TFIID.
    Plant Mol. Biol., 2007. 64(1-2): p. 73-87
    [PMID:17340043]