PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV57882.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

WOX

Protein Properties

Length: 383aa MW: 43729.7 Da PI: 8.7676

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV57882.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	69.7	3.5e-22	89	148	3	57
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t++ql++Leel+++ r+psa++++++A+kl +++ ++V++WFqN++a+e++ KZV57882.1 89 PRWNPTPDQLQALEELYRRgIRTPSAQQIQQIAAKLrrfgKIEGKNVFYWFQNHKARERQ 148 8***************99************************************97 PP
2	Wus_type_Homeobox	112.6	2e-36	88	150	3	65
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++RW+Ptp+Q++ Leely++G+rtP++++iq+i+a+L+++Gkie+kNVfyWFQN+kaRerqk+ KZV57882.1 88 SPRWNPTPDQLQALEELYRRGIRTPSAQQIQQIAAKLRRFGKIEGKNVFYWFQNHKARERQKK 150 68***********************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	9.3E-6	86	153	IPR001356	Homeobox domain
SuperFamily	SSF46689	7.01E-13	88	154	IPR009057	Homeodomain-like
CDD	cd00086	8.89E-8	89	150	No hit	No description
Pfam	PF00046	7.9E-20	89	148	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.4E-9	89	148	IPR009057	Homeodomain-like
PROSITE profile	PS50071	11.37	94	149	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence Send to blast
MWMVDCDDQH VKDIKVSIGR TLQPLTPRAI TAAATMKCAY STLPGPCCTN HPNVIGWSQP 60 IINLYTMLQG CERDYGMRRE MNRVPLVSPR WNPTPDQLQA LEELYRRGIR TPSAQQIQQI 120 AAKLRRFGKI EGKNVFYWFQ NHKARERQKK RRQLELHAGK KLHHADVMFE AQLQSGYVIL 180 PSQHVCNLIF VSEKTPRSSL ELVSWKFIFM GSIFVSEKNR SHGCSRENID LGHVKKQSST 240 FSNSSTPSQD SVSLHAPVVA TEWTKLDQRE LQQQAKNEQT CWQLDLSSSM PSNKSDDIIN 300 KYAVPENNPD QENEKPLNPP NISLLMFPAH DSGIKENRTL LLFPVKSHGS SALCTAEEEI 360 NDGSSTRTRF TPSEYYEFLP MKN

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence Send to blast

MWMVDCDDQH VKDIKVSIGR TLQPLTPRAI TAAATMKCAY STLPGPCCTN HPNVIGWSQP  60
IINLYTMLQG CERDYGMRRE MNRVPLVSPR WNPTPDQLQA LEELYRRGIR TPSAQQIQQI  120
AAKLRRFGKI EGKNVFYWFQ NHKARERQKK RRQLELHAGK KLHHADVMFE AQLQSGYVIL  180
PSQHVCNLIF VSEKTPRSSL ELVSWKFIFM GSIFVSEKNR SHGCSRENID LGHVKKQSST  240
FSNSSTPSQD SVSLHAPVVA TEWTKLDQRE LQQQAKNEQT CWQLDLSSSM PSNKSDDIIN  300
KYAVPENNPD QENEKPLNPP NISLLMFPAH DSGIKENRTL LLFPVKSHGS SALCTAEEEI  360
NDGSSTRTRF TPSEYYEFLP MKN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV57882.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2Z7DEE2	0.0	A0A2Z7DEE2_9LAMI; WUSCHEL-related homeobox 1

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4681	23	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18010.1	4e-35	WUSCHEL related homeobox 1