PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KZV57682.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 145aa MW: 16576 Da PI: 11.7478 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.3 | 3.4e-17 | 35 | 86 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 ++y+GVr ++ +g+Wv+eIr p++ + r++lg+f ++e+Aa a++ + +l+g+ KZV57682.1 35 PHYRGVRKRR-WGKWVSEIRGPRK---KNRIWLGSFPSPEMAAIAYDVSAHCLKGH 86 68*****887.*******999854...59************************996 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.5E-11 | 35 | 86 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.70E-26 | 35 | 95 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.0E-29 | 36 | 94 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.01 | 36 | 93 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.0E-33 | 36 | 99 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-21 | 36 | 94 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.5E-11 | 37 | 48 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-11 | 75 | 95 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 145 aa Download sequence Send to blast |
MEQPPSRDTN DDTSVGGAAR ISSKQAGPLS ETRHPHYRGV RKRRWGKWVS EIRGPRKKNR 60 IWLGSFPSPE MAAIAYDVSA HCLKGHKARL NFPEAIEHLP RPSTSTVRDI QTSPHWQPGW 120 WLRRVAPPPK LDALMTSRRR LICRS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 7e-16 | 36 | 93 | 5 | 63 | ATERF1 |
3gcc_A | 7e-16 | 36 | 93 | 5 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00120 | DAP | Transfer from AT1G01250 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KZV57682.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012835591.1 | 4e-45 | PREDICTED: ethylene-responsive transcription factor ERF023-like | ||||
Swissprot | Q1ECI2 | 2e-41 | ERF23_ARATH; Ethylene-responsive transcription factor ERF023 | ||||
TrEMBL | A0A2G9HIK1 | 5e-44 | A0A2G9HIK1_9LAMI; Uncharacterized protein | ||||
STRING | Migut.N01538.1.p | 1e-44 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13874 | 13 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G01250.1 | 6e-44 | ERF family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|