PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV57638.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MYB
Protein Properties Length: 291aa    MW: 32450.4 Da    PI: 7.8517
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV57638.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.85.1e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++lvd++++ G g+W++ ++  g+ R++k+c++rw +yl
       KZV57638.1 14 KGPWTPEEDDKLVDYINKNGHGSWRSLPKLAGLLRCGKSCRLRWTNYL 61
                     79******************************99************97 PP
2Myb_DNA-binding44.92.6e-1467112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++++eE++l ++++  lG++ W++Ia+++  gRt++++k+ w+++l
       KZV57638.1  67 RGPFSAEEEKLVIQLHGILGNR-WAAIASKLA-GRTDNEIKNLWNTHL 112
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-24564IPR009057Homeodomain-like
PROSITE profilePS5129424.116965IPR017930Myb domain
SuperFamilySSF466891.39E-2911108IPR009057Homeodomain-like
SMARTSM007179.3E-141363IPR001005SANT/Myb domain
PfamPF002492.0E-161461IPR001005SANT/Myb domain
CDDcd001671.56E-101661No hitNo description
Gene3DG3DSA:1.10.10.601.9E-2465116IPR009057Homeodomain-like
SMARTSM007175.2E-1466114IPR001005SANT/Myb domain
PROSITE profilePS5129419.04966116IPR017930Myb domain
PfamPF002494.3E-1367112IPR001005SANT/Myb domain
CDDcd001676.14E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MGRAPCCDKK GLKKGPWTPE EDDKLVDYIN KNGHGSWRSL PKLAGLLRCG KSCRLRWTNY  60
LRPDIKRGPF SAEEEKLVIQ LHGILGNRWA AIASKLAGRT DNEIKNLWNT HLKKRLLRMG  120
IDPQTHELST TPDGSQKILL ATPSTRHMAQ WEGARLEAEA RLSKESLLSN ISSASRKSDA  180
DLFLRLWNSE VGETFRKSND AGKIVSPSLV SSTSGTTTEA GFLAANFSEN YHDTGCKSCN  240
EEAWQRSDSS NSNGFEDSSE SALQLLLDFP SNNDMSFLEH ADNYNLYPAI F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-28121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV57638.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011091956.11e-144myb-related protein Zm38 isoform X2
SwissprotQ9M2D91e-116MYB17_ARATH; Transcription factor MYB17
TrEMBLA0A2G9G4X21e-138A0A2G9G4X2_9LAMI; Transcription factor, Myb superfamily
STRINGSolyc01g094360.2.11e-133(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.11e-118myb domain protein 17