PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV57403.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family AP2
Protein Properties Length: 500aa    MW: 55261.4 Da    PI: 9.0516
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV57403.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP229.51.9e-09148177135
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgk 35 
                 s+y+GV++++++grW+++I+d      + k+++lgk
  KZV57403.1 148 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGK 177
                 78*******************......55******8 PP
2AP236.11.6e-11289339155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s+y+GV+ +k  grW+A+   +     +++ +lg f+++ eA +a+++a+ k +g
  KZV57403.1 289 SKYRGVTLHK-CGRWEARMGQF--L-GKRYMYLGLFDSEVEASRAYDKAAIKCNG 339
                 89********.7******5553..2.26**********99**********98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103212.998149254IPR001471AP2/ERF domain
SMARTSM003806.9E-18149260IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.8E-8225254IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-5225254IPR016177DNA-binding domain
CDDcd000187.27E-22289349No hitNo description
SuperFamilySSF541711.31E-14289349IPR016177DNA-binding domain
PfamPF008476.6E-7289339IPR001471AP2/ERF domain
PROSITE profilePS5103214.065290347IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-12290347IPR001471AP2/ERF domain
SMARTSM003804.2E-27290353IPR001471AP2/ERF domain
PRINTSPR003676.8E-5291302IPR001471AP2/ERF domain
PRINTSPR003676.8E-5329349IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MLDLNAPAAI SAEVHRRKTL ETAPDSVTST TTSSTDNGVA EELDSGGCTR RKQLPTVNFS  60
ILDKDVIEIE DDADDDVNVY KTELQLFPMC AASSSPPATA VSRAKYWLDL SAPEVSGGVD  120
MGFYKAQYPA QPQPPAKKSR RGPRSRSSQY RGVTFYRRTG RWESHIWDCG KQVYLGKKLN  180
YFRRMIYVHA PLDFVAYTCI NLVLQVVLVS LLQSHINLVG FSVSGGFDTA HAAARAYDHA  240
AIKFRGVDAD INFKLGDYEE DMKQMKDLTK EEFVHILRRR SNGFSRGSSK YRGVTLHKCG  300
RWEARMGQFL GKRYMYLGLF DSEVEASRAY DKAAIKCNGT ETVSNFDPSV YERDRHIGHR  360
DAGIDGNLDL NLGMCLASNG PRGDDVTRKL DFSCKGTRVE TPFVSPHRLV ASKYSPMWAG  420
MFSGFATNSK ERTNNGAIIS PPYANWSWKM QGAGIMTTPV PLLSSAASSG FFTTATPNSS  480
SLVSSTSMAQ LPATKVNNLQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q84TB5}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV57403.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012834705.11e-140PREDICTED: floral homeotic protein APETALA 2 isoform X1
SwissprotB8AMA91e-86AP22_ORYSI; APETALA2-like protein 2
TrEMBLA0A2Z7DI490.0A0A2Z7DI49_9LAMI; Uncharacterized protein
STRINGMigut.F02018.1.p1e-140(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59124116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.32e-73related to AP2.7