PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV57040.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family bHLH
Protein Properties Length: 303aa    MW: 32638.6 Da    PI: 5.5156
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV57040.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.75.5e-10152196554
                 HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 h+++Er RR+ri +++  L+el+P++      K + a++L +  +Y+k L
  KZV57040.1 152 HSIAERLRRERISERIKALQELVPSC-----NKTDRAAMLDEILDYVKFL 196
                 99***********************8.....6****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.43E-11145201No hitNo description
SuperFamilySSF474599.29E-16145206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.323147196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-15149207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-7152196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-11153202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MTTNPPDGYA ADDFLEQILS IPSYTGLPGA DSGNSSETAT LNHSVSQLGS AAAVGSALHH  60
HTLFPLGLSL DNGHDAVSDS GGFTVKHERE AANNNIGSLY PAFDHLQGHA IRHPVPQAFQ  120
GQLTPSTAVT VPHAPGIKPR VRARRGQATD PHSIAERLRR ERISERIKAL QELVPSCNKT  180
DRAAMLDEIL DYVKFLRLQV KVLSMSRLGG AGAVAQLVTD IPLQSMEGET SEIGSNQHVW  240
EKWSNEETEN EVAKLMEEDV GAAMQFLQSK SLCIMPISLA ALIYPTNQSD DSTLVKPEPP  300
APS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1156161RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV57040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076653.11e-179transcription factor UNE12
SwissprotO227681e-82UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A2Z7DBG20.0A0A2Z7DBG2_9LAMI; Uncharacterized protein
STRINGPGSC0003DMT4000348401e-149(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA64211932
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.21e-80bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]