PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV57029.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family HD-ZIP
Protein Properties Length: 281aa    MW: 31251.2 Da    PI: 8.3292
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV57029.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.16.1e-18132186256
                 T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 rk+ ++tk q   Lee F+ +++++ +++++LA+ l+L  rqV vWFqNrRa+ k
  KZV57029.1 132 RKKLRLTKVQSALLEESFKIHSTLNPKQKQDLARDLKLRPRQVEVWFQNRRARTK 186
                 678899***********************************************98 PP
2HD-ZIP_I/II121.63.9e-39132222192
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  +kk+rl+k q++lLEesF+ +++L+p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke +eL+ +lk
   KZV57029.1 132 RKKLRLTKVQSALLEESFKIHSTLNPKQKQDLARDLKLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELK-ALK 222
                  69*************************************************************************************9.665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-16112186IPR009057Homeodomain-like
SuperFamilySSF466891.71E-17121189IPR009057Homeodomain-like
PROSITE profilePS5007116.698128188IPR001356Homeobox domain
SMARTSM003891.3E-14130192IPR001356Homeobox domain
CDDcd000869.12E-15132189No hitNo description
PfamPF000462.0E-15132186IPR001356Homeobox domain
PROSITE patternPS000270163186IPR017970Homeobox, conserved site
SMARTSM003402.0E-22188232IPR003106Leucine zipper, homeobox-associated
PfamPF021832.1E-10188222IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MGFDDLHSAV GLALGLGISS PLNLQHKSKN PSPSQKLDDD QFCDPLNLSL SGETYLQIHE  60
AVKKVGTDNK IKVVCSDRQL SCGRLYRQDS AASSFSNVSV KREREFGSSE EGETERVSSR  120
ISDEDDDGSN GRKKLRLTKV QSALLEESFK IHSTLNPKQK QDLARDLKLR PRQVEVWFQN  180
RRARTKLKQT EVDCEFLKKC CETLTDENRR LQKELQELKA LKSAAQPLYM QLPAATLTMC  240
PSCESIGAAS SHASETAARS SFAVASKPHF FNHFNSPSAA C
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1180188RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00477DAPTransfer from AT4G37790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV57029.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099420.11e-122homeobox-leucine zipper protein HAT22-like
SwissprotP466041e-86HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A2Z7DB190.0A0A2Z7DB19_9LAMI; Uncharacterized protein
STRINGXP_009775231.11e-108(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.18e-75HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]