PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV56958.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family NAC
Protein Properties Length: 278aa    MW: 32083.1 Da    PI: 8.196
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV56958.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM173.66e-5491351128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 
                 lppGfrFhPtdeel+++yL++++++++++++++i+evdiyk++Pw+Lp+k++ +e+ewyfF++rd+ky++g r+nra+ sgyWkatg+dk+++s +++ 
  KZV56958.1   9 LPPGFRFHPTDEELIMCYLRNQATSRPCPASNIIPEVDIYKFDPWELPEKAEVGENEWYFFTPRDRKYPNGVRPNRAAISGYWKATGTDKAIYS-GSSY 106
                 79****************************99****************99999*****************************************.999* PP

         NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                 vg+kk Lvfykg+ pkg ktdW+mheyrl
  KZV56958.1 107 VGIKKALVFYKGKPPKGIKTDWIMHEYRL 135
                 ***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-645162IPR003441NAC domain
PROSITE profilePS5100560.4139162IPR003441NAC domain
PfamPF023657.3E-2610135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009825Biological Processmultidimensional cell growth
GO:0009835Biological Processfruit ripening
GO:0009908Biological Processflower development
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MVGRNCKELP PGFRFHPTDE ELIMCYLRNQ ATSRPCPASN IIPEVDIYKF DPWELPEKAE  60
VGENEWYFFT PRDRKYPNGV RPNRAAISGY WKATGTDKAI YSGSSYVGIK KALVFYKGKP  120
PKGIKTDWIM HEYRLSDSRS LPNKQHGSMR LDDWVLCRIY KKKNLGKPDD QRVENTFSQI  180
PSTIEPQVAQ KLSPRNFSLS DHLWDFDYIN SISQLMHENS CNQPFHVQET TSSDNGNGPR  240
FDVERSQISQ AQHPYTSGAI HFPGNQPPVY LNPVYEFQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-68916417167NO APICAL MERISTEM PROTEIN
1ut4_B4e-68916417167NO APICAL MERISTEM PROTEIN
1ut7_A4e-68916417167NO APICAL MERISTEM PROTEIN
1ut7_B4e-68916417167NO APICAL MERISTEM PROTEIN
3swm_A5e-68916420170NAC domain-containing protein 19
3swm_B5e-68916420170NAC domain-containing protein 19
3swm_C5e-68916420170NAC domain-containing protein 19
3swm_D5e-68916420170NAC domain-containing protein 19
3swp_A5e-68916420170NAC domain-containing protein 19
3swp_B5e-68916420170NAC domain-containing protein 19
3swp_C5e-68916420170NAC domain-containing protein 19
3swp_D5e-68916420170NAC domain-containing protein 19
4dul_A4e-68916417167NAC domain-containing protein 19
4dul_B4e-68916417167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence and reduces fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. {ECO:0000269|PubMed:29760199}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00221DAPTransfer from AT1G69490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV56958.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. {ECO:0000269|PubMed:29760199}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022878302.11e-131NAC transcription factor 29-like
SwissprotK4BWV21e-114NAP1_SOLLC; NAC domain-containing protein 1
TrEMBLA0A2Z7DHQ70.0A0A2Z7DHQ7_9LAMI; NAC domain-containing protein
STRINGXP_009598866.11e-121(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA74624103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.11e-100NAC-like, activated by AP3/PI
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Ma X, et al.
    The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato.
    Plant Physiol., 2018. 177(3): p. 1286-1302
    [PMID:29760199]