PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV56914.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | NAC | ||||||||
Protein Properties | Length: 188aa MW: 21631 Da PI: 4.5301 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 117.1 | 1.7e-36 | 11 | 129 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 lppGfrF Ptdeelvv++L++k++ + + ++i+++d+y ++PwdL+ k+ +e ++wyf+s+r + rat sgyW++ g +++++++ g++ KZV56914.1 11 LPPGFRFYPTDEELVVHFLQRKAALLPYDP-DIIPDLDLYPYDPWDLNGKAMGEGNKWYFYSRRTQ--------VRATGSGYWQSLGVEEPIYTSAGSK 100 79*************************999.99**************977778899******9865........699********************** PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 vg+kk +f+ g+ +g+kt+W+m+eyrl KZV56914.1 101 VGIKKYCAFHIGEPAQGVKTNWIMEEYRL 129 ***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.79E-47 | 7 | 158 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 44.821 | 11 | 160 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.5E-22 | 12 | 129 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0043067 | Biological Process | regulation of programmed cell death | ||||
GO:0048367 | Biological Process | shoot system development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MGDYSSFNSN LPPGFRFYPT DEELVVHFLQ RKAALLPYDP DIIPDLDLYP YDPWDLNGKA 60 MGEGNKWYFY SRRTQVRATG SGYWQSLGVE EPIYTSAGSK VGIKKYCAFH IGEPAQGVKT 120 NWIMEEYRLS DHASTHRASR SRRSSRIDYS KWVVCRVYEN DDDDGTELSC LDEVFLSLDD 180 LDEISLPE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 1e-40 | 10 | 161 | 19 | 169 | NAC domain-containing protein 19 |
3swm_B | 1e-40 | 10 | 161 | 19 | 169 | NAC domain-containing protein 19 |
3swm_C | 1e-40 | 10 | 161 | 19 | 169 | NAC domain-containing protein 19 |
3swm_D | 1e-40 | 10 | 161 | 19 | 169 | NAC domain-containing protein 19 |
3swp_A | 1e-40 | 10 | 161 | 19 | 169 | NAC domain-containing protein 19 |
3swp_B | 1e-40 | 10 | 161 | 19 | 169 | NAC domain-containing protein 19 |
3swp_C | 1e-40 | 10 | 161 | 19 | 169 | NAC domain-containing protein 19 |
3swp_D | 1e-40 | 10 | 161 | 19 | 169 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV56914.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011092697.1 | 2e-96 | NAC domain-containing protein 104 isoform X1 | ||||
Refseq | XP_020553092.1 | 2e-96 | NAC domain-containing protein 104 isoform X1 | ||||
Refseq | XP_020553093.1 | 2e-96 | NAC domain-containing protein 104 isoform X1 | ||||
Swissprot | Q8GWK6 | 1e-79 | NC104_ARATH; NAC domain-containing protein 104 | ||||
TrEMBL | A0A2Z7DC94 | 1e-138 | A0A2Z7DC94_9LAMI; Uncharacterized protein | ||||
STRING | XP_009762857.1 | 9e-91 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3766 | 24 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64530.1 | 7e-63 | xylem NAC domain 1 |
Publications ? help Back to Top | |||
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