PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV56528.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

NAC

Protein Properties

Length: 299aa MW: 33496.8 Da PI: 7.2708

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV56528.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	173.8	5e-54	3	128	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 lppGfrFhPtdeel+++yL+kk++++++++ +i evd++kvePwdLp + k +ekewyfF+ +dkky+tg+r+nrat++gyWkatgkdke+++ +++l KZV56528.1 3 LPPGFRFHPTDEELITYYLAKKIADQNFSA-VAIGEVDMNKVEPWDLPWRGKVGEKEWYFFCVKDKKYPTGSRANRATAAGYWKATGKDKEIYR-GKTL 99 79***********************999.67***********8778899************************************.999 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 vg+kktLvfykgrapkgek++Wv hey++ KZV56528.1 100 VGMKKTLVFYKGRAPKGEKSNWVAHEYNI 128 ***************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.31E-58	2	145	IPR003441	NAC domain
PROSITE profile	PS51005	56.47	3	145	IPR003441	NAC domain
Pfam	PF02365	1.7E-27	4	127	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence Send to blast
MELPPGFRFH PTDEELITYY LAKKIADQNF SAVAIGEVDM NKVEPWDLPW RGKVGEKEWY 60 FFCVKDKKYP TGSRANRATA AGYWKATGKD KEIYRGKTLV GMKKTLVFYK GRAPKGEKSN 120 WVAHEYNIPN HSTQNNWVLS RVFQKTSGGK RVHISELITM HPPTAPPQLT DPIPPYFTTK 180 TEPVDPQSGF VPCFSSPHIP TSYPWGPSGQ VLNRSGGTGR QIHPSLTLEE STFFRDMVGQ 240 TMNHERKIED GDMASVSQET AFSTDNSNLE VENISFDAQG LGLALASVGS LDLDTLWGY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-52	1	151	15	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-52	1	151	15	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-52	1	151	15	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-52	1	151	15	171	NO APICAL MERISTEM PROTEIN
3swm_A	3e-52	1	151	18	174	NAC domain-containing protein 19
3swm_B	3e-52	1	151	18	174	NAC domain-containing protein 19
3swm_C	3e-52	1	151	18	174	NAC domain-containing protein 19
3swm_D	3e-52	1	151	18	174	NAC domain-containing protein 19
3swp_A	3e-52	1	151	18	174	NAC domain-containing protein 19
3swp_B	3e-52	1	151	18	174	NAC domain-containing protein 19
3swp_C	3e-52	1	151	18	174	NAC domain-containing protein 19
3swp_D	3e-52	1	151	18	174	NAC domain-containing protein 19
4dul_A	2e-52	1	151	15	171	NAC domain-containing protein 19
4dul_B	2e-52	1	151	15	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV56528.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011071688.1	1e-106	NAC domain-containing protein 79
Refseq	XP_011071689.1	1e-106	NAC domain-containing protein 79
Refseq	XP_020547905.1	1e-106	NAC domain-containing protein 79
Swissprot	Q9FLJ2	5e-95	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A2Z7DGR6	0.0	A0A2Z7DGR6_9LAMI; NAC domain-containing protein 100
STRING	XP_009802067.1	2e-97	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA152	24	279

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-94	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]