PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV56325.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | C2H2 | ||||||||
Protein Properties | Length: 359aa MW: 40421.6 Da PI: 7.6757 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.3 | 0.00012 | 60 | 81 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C C+k+F++ L H+r H KZV56325.1 60 VCDLCNKTFKSGKALGGHMRIH 81 6*******************99 PP | |||||||
2 | zf-C2H2 | 19.7 | 2.3e-06 | 130 | 151 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +Cp Cgk+F++ + H+r+H KZV56325.1 130 SCPVCGKVFPSLKSVFGHMRKH 151 6********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.042 | 59 | 81 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 1.2E-9 | 59 | 83 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.429 | 59 | 86 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.14E-8 | 60 | 81 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 3.8E-4 | 60 | 83 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 61 | 81 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.14E-8 | 124 | 151 | No hit | No description |
PROSITE profile | PS50157 | 9.265 | 129 | 156 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0066 | 129 | 151 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 3.8E-7 | 131 | 153 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 131 | 151 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 359 aa Download sequence Send to blast |
MNIASQSIKK RYNCRSVECE SVVEEGELFI ELKIPKDDGK DVVIEDTEGQ MRKTSDERRV 60 CDLCNKTFKS GKALGGHMRI HSQKGKKKSL NSKLQSVKCK KENPRAEMDR RVTDSECENN 120 EAVGVEERPS CPVCGKVFPS LKSVFGHMRK HSDRNWRGSR PPPNDKTSSG SCLSYDENPE 180 NIDDQDEPLG GVDLTAYLRG WNSTARRGRK RLSLEMDDVH ELEQLEAAVG LMMLMMDRQT 240 QSEDTVISRP GVGGGFLIQD LGSKMLIKNK KKRKKVRLSD LQPPQNATFP VSSEENRRQA 300 LGSHMSGHNE FTSVIKKQIE ETNENGMEGT ICNKTRSSHE IEIDLNKPPE SECHLETAN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 270 | 274 | KKRKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV56325.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2050 | 22 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26940.1 | 6e-17 | C2H2 family protein |