PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV55680.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

Protein Properties

Length: 388aa MW: 43900.5 Da PI: 8.85

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV55680.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	50.6	3.4e-16	38	118	10	98
HHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 10 vlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +k++ lvlpkkf+ eh + + t+++ de++r+++ +++rk++ ++ GW+ Fv an+L+ gD++v++l++ +++v ++r KZV55680.1 38 GGKEQFLVLPKKFCYEHlpM----DNDTVVFLDEKNRRFSTGYRFRKCR----FQVGWRAFVYANRLDKGDVLVLHLIEP--LTFKVYIVR 118 578889******999642....3449***********888888....99*******************9975..333665554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.8E-16	22	119	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	6.87E-16	22	118	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	6.88E-15	25	118	No hit	No description
PROSITE profile	PS50863	10.489	29	120	IPR003340	B3 DNA binding domain
SMART	SM01019	1.5E-9	32	123	IPR003340	B3 DNA binding domain
Pfam	PF02362	5.1E-13	39	118	IPR003340	B3 DNA binding domain
Pfam	PF05266	5.0E-9	260	362	IPR007930	Protein of unknown function DUF724

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence Send to blast
MNSASCNCAL NGATLVQAKL SLEFHSLVKL VTQQQVPGGK EQFLVLPKKF CYEHLPMDND 60 TVVFLDEKNR RFSTGYRFRK CRFQVGWRAF VYANRLDKGD VLVLHLIEPL TFKVYIVRAC 120 RPKKVNGAIQ NPGKVVLTGT ENGDPVSEDA RYRMVVKKES QDTFRDDSDK GDTTERLKFD 180 HRPTPSRDNI CSDVSGGIRF SASVLKFQDV KRFEDFQIHV DGLILDSELP VDAKVKYYAL 240 CCSQKMFLHK RVTGLSRSLV VGMISETANI ADAIKSTSLA ASLHNLESWD NTLKAFEDLG 300 MSVGFLRTRI DMLVKVSRKY ETINESKSAE YKLIEEKKRS LNEIVSTMDA LRKSMEALKE 360 LIKNLEAKID GDMEGLGSEF NRIATAPW

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence Send to blast

MNSASCNCAL NGATLVQAKL SLEFHSLVKL VTQQQVPGGK EQFLVLPKKF CYEHLPMDND  60
TVVFLDEKNR RFSTGYRFRK CRFQVGWRAF VYANRLDKGD VLVLHLIEPL TFKVYIVRAC  120
RPKKVNGAIQ NPGKVVLTGT ENGDPVSEDA RYRMVVKKES QDTFRDDSDK GDTTERLKFD  180
HRPTPSRDNI CSDVSGGIRF SASVLKFQDV KRFEDFQIHV DGLILDSELP VDAKVKYYAL  240
CCSQKMFLHK RVTGLSRSLV VGMISETANI ADAIKSTSLA ASLHNLESWD NTLKAFEDLG  300
MSVGFLRTRI DMLVKVSRKY ETINESKSAE YKLIEEKKRS LNEIVSTMDA LRKSMEALKE  360
LIKNLEAKID GDMEGLGSEF NRIATAPW

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV55680.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2Z7D7R6	0.0	A0A2Z7D7R6_9LAMI; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3023	23	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	6e-16	B3 family protein