PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV55145.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family C2H2
Protein Properties Length: 452aa    MW: 49598.2 Da    PI: 7.781
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV55145.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.94e-06118138323
                 ETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                 C  Cgk+F+++ +L  H+++H
  KZV55145.1 118 CRVCGKRFRSNKSLYGHMKNH 138
                 *******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.37E-565138No hitNo description
PfamPF139123.1E-66790IPR007087Zinc finger, C2H2
PROSITE profilePS501579.1626795IPR007087Zinc finger, C2H2
SMARTSM003552.26790IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806990IPR007087Zinc finger, C2H2
SMARTSM003550.0085116138IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.032116143IPR007087Zinc finger, C2H2
PfamPF139121.7E-5118140IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.8E-4118138IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280118138IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MEDSGEGKPA EAAESRETTS ELAEEMDFAP DEEMKSLAEN DFSSGGAGQQ GGLHRRSFPE  60
AEDIKKHYCK ECDKVFSCGK ALGGHMSSAH AQANKGIHGR KKDFKNLHKG MSVPQIACRV  120
CGKRFRSNKS LYGHMKNHPE RKWRGVSPPP EEMIESSPPS SPQRDMSDPG PVLAWSVTAK  180
RGRAASKNPD FEHGVHVAAH QLLQLLNSNP GPRLDRGGDS SFRRKKEFPA QKGLKICERG  240
GRDEEILAKS VSKMIPENGK GKAKMEEHDD YSCIKGSSSS SDDCENNSNV MFDFTVRYPA  300
RENGKEEVKS YEPGSSRILA SSHREYSTGR DKKAATWSKQ AAAAIRRRVP STFVVFVAKK  360
FDNHKALGGH MASHNRFKIC IFNANGKPTY VAAADGDVTA ENSEQIAQNI EQSDAASEPG  420
GGGRAKEVPE VKVESKVLDF DLNESPRCDE DE
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV55145.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2Z7D6V90.0A0A2Z7D6V9_9LAMI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20502263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.16e-13C2H2 family protein