PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV54583.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | MYB | ||||||||
Protein Properties | Length: 228aa MW: 25786.8 Da PI: 8.5933 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.4 | 3.3e-18 | 37 | 82 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd++l ++v ++G ++W++I++++ gR++k+c++rw + KZV54583.1 37 KGPWSAEEDKILTRLVDRYGARNWSLISKYIK-GRSGKSCRLRWCNQ 82 79*****************************9.***********985 PP | |||||||
2 | Myb_DNA-binding | 55.7 | 1.2e-17 | 91 | 133 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++++ Ede ++ a+ ++G++ W+tIar ++ gRt++ +k++w++ KZV54583.1 91 PFSPMEDETILAAHDKYGNR-WATIARLLP-GRTDNAVKNHWNST 133 89******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.594 | 32 | 87 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.69E-31 | 35 | 130 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.3E-16 | 36 | 85 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.6E-18 | 37 | 82 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-24 | 38 | 90 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.86E-14 | 39 | 81 | No hit | No description |
SMART | SM00717 | 2.7E-15 | 88 | 136 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.988 | 89 | 138 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.9E-14 | 91 | 133 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.4E-23 | 91 | 137 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.00E-11 | 91 | 134 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MERYSRCSST SSSSSDSSSD SCGTKTLPDG DKSERIKGPW SAEEDKILTR LVDRYGARNW 60 SLISKYIKGR SGKSCRLRWC NQLSPDVEHR PFSPMEDETI LAAHDKYGNR WATIARLLPG 120 RTDNAVKNHW NSTLKRRYLQ KQKQSVDEPK DIERNMGSAS YDFHEYDPMT ALSLAPPGMG 180 GSGMAENRAE MESMPAGFWD VMRNVIAKEV REYVSSSFPE AANSSRFH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-40 | 36 | 137 | 6 | 107 | B-MYB |
1gv2_A | 2e-40 | 34 | 137 | 1 | 104 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV54583.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011083803.1 | 1e-109 | transcription factor MYB44-like | ||||
TrEMBL | A0A2Z7D4Z1 | 1e-169 | A0A2Z7D4Z1_9LAMI; Uncharacterized protein | ||||
STRING | XP_009620130.1 | 1e-92 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7950 | 21 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50060.1 | 3e-57 | myb domain protein 77 |