PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV54110.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | TCP | ||||||||
Protein Properties | Length: 201aa MW: 22389.2 Da PI: 6.1515 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 80.5 | 4.3e-25 | 43 | 111 | 7 | 75 |
TCP 7 rhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasecea 75 +++ k + RR+R++a+caar+F+L++eLG+ ++++tieW l+qa+p+i ++tg+++++a+ a KZV54110.1 43 PTKNLNKKSDNHYRRMRIPALCAARIFQLTRELGHHTNGETIEWILRQAEPSINAITGSGTIPAETICA 111 5677777899999**********************************************9999843322 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 15.395 | 44 | 98 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 1.1E-20 | 56 | 115 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MSSFDKLHSP PPSENNHSSS LIATPQNTDT SASKRKDNSR MNPTKNLNKK SDNHYRRMRI 60 PALCAARIFQ LTRELGHHTN GETIEWILRQ AEPSINAITG SGTIPAETIC ASSGILPPVS 120 ESSTILAPET SLVAHSLEST RAMDMRMVTP RSGFELNSPP SLTQMEVPMS GNLHVPFTQM 180 MQQPDADMEE WDEIWFKENF P |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV54110.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2Z7D4Q1 | 1e-147 | A0A2Z7D4Q1_9LAMI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA248 | 24 | 201 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72010.1 | 8e-26 | TCP family protein |