PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV54106.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MYB_related
Protein Properties Length: 677aa    MW: 75670.7 Da    PI: 9.8258
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV54106.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.94.8e-08573622147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++ +E e lv+av++lG+g+W+ I  +      +Rt  ++k++w ++
       KZV54106.1 573 RRPFSVQEVEALVEAVEKLGTGRWRDIKMRAFenaDHRTYVDLKDKWKTL 622
                      6799***********************7777679*9***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.892568627IPR017930Myb domain
SMARTSM007179.2E-9572625IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-11573623IPR009057Homeodomain-like
PfamPF002499.5E-6573622IPR001005SANT/Myb domain
CDDcd116602.21E-18574624No hitNo description
SuperFamilySSF466891.25E-16574655IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 677 aa     Download sequence    Send to blast
MAPKKRMEFG LNGYLTPVIP RAPRSIRKRE PLNKSVEGNK LCAFELLATV AGQLLQESEG  60
FTSDYVAEGK AHFGDGKIGN RKGQPKYDAT LKLDNHDQHG SCAESVSFPE IPVQECDLFS  120
NLKGLRRTED GSAVAHYSVE SSDSPKKVDC GLKLVMPEEK SLDTAITSVV ERLNKKVEVK  180
QQTLVENGKI KVVDLFTSNR STVKDPSREF VDTDKPFSLE SSVHFSLYRD PIRGALLRKR  240
CNSVNLGIRD DDENSFGCNK FCTKIRSFLP HSCTERHRMR MMLKSKYRKV APKVKHYELY  300
STRDRMRTFC RYRKASYARK ICQRLPFKKR KLSDNSFAVA YKQDCSSDSI FPKKGARGDE  360
CDSAVILHGA SGASVNMKGH KKVRFSITSF TVPELYIEVP ETATIGSLKR NVMETVTSIL  420
RGGIRIGVVL QGKKVIDNNV TLQQACISQS CNLSNLGFTL EPNYACVSQS KNPEKPPLVL  480
PCDSDQQSQR SASTLATDSC ITHASDVRFV NKLGNVLVNN ELMSSPKSPT DAPMDVTVAN  540
SKALVHVTPM NIEALPVATL NPKCSELSRR RIRRPFSVQE VEALVEAVEK LGTGRWRDIK  600
MRAFENADHR TYVDLKDKWK TLVHTGSISP QQRRGEPVPQ ELLDRVLAAH SYWSQNQAKQ  660
GKQLIEPVKI IVADASV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A7e-595636757116Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1318329RKICQRLPFKKR
2322330QRLPFKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV54106.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011085026.10.0telomere repeat-binding protein 4
TrEMBLA0A2Z7DA300.0A0A2Z7DA30_9LAMI; Telomere binding protein
STRINGMigut.F00779.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20931729
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-81TRF-like 2