PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV53764.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family HD-ZIP
Protein Properties Length: 426aa    MW: 48109.6 Da    PI: 5.1583
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV53764.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.81.8e-1849102356
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 k++++t +q+++Le+ Fe ++++  e++ +LAk++gL+ rqV vWFqNrRa++k
  KZV53764.1  49 KKRRLTVDQVKALEKSFEVENKLEPERKVKLAKEIGLQPRQVAVWFQNRRARYK 102
                 56689************************************************9 PP
2HD-ZIP_I/II127.17.7e-4148140193
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  ekkrrl+ +qvk+LE+sFe e+kLeperKv+la+e+glqprqvavWFqnrRAR+ktkqlE+dy  Lk+++d+lk++ ++L++++++L ++++e
   KZV53764.1  48 EKKRRLTVDQVKALEKSFEVENKLEPERKVKLAKEIGLQPRQVAVWFQNRRARYKTKQLERDYGILKANFDNLKQNYDTLHSDNQALLRQIQE 140
                  69*************************************************************************************999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.18E-1841106IPR009057Homeodomain-like
PROSITE profilePS5007117.31344104IPR001356Homeobox domain
SMARTSM003896.2E-1847108IPR001356Homeobox domain
CDDcd000862.74E-1649105No hitNo description
PfamPF000461.2E-1549102IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.7E-1951110IPR009057Homeodomain-like
PRINTSPR000313.6E-57584IPR000047Helix-turn-helix motif
PROSITE patternPS00027079102IPR017970Homeobox, conserved site
PRINTSPR000313.6E-584100IPR000047Helix-turn-helix motif
PfamPF021836.6E-17104145IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0030308Biological Processnegative regulation of cell growth
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048573Biological Processphotoperiodism, flowering
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MKRLGSSDSL SALMSTDELN QESEPIYSRE FRTMLEGLDE EEPGHVSEKK RRLTVDQVKA  60
LEKSFEVENK LEPERKVKLA KEIGLQPRQV AVWFQNRRAR YKTKQLERDY GILKANFDNL  120
KQNYDTLHSD NQALLRQIQE LKSKVNGDDV KSERRAISVK EEAMVLSDTE EKNNLETPWN  180
DNVSSFLDFK DGSSDSTDSS AILNEGNNSP HQFTGSSVVG DETKAVKATS LIGDDSKFVE  240
YNFLGEDHDQ SCSSLFSDEQ APTLHCTLQA RPVSSSGTSP EDHVPTTEEE SILDMPFLIQ  300
AYPVRIHFPY LKILGRYNFP YLVDEIVENR GRSPRRSWRL YRPSEISAEI CPSQPPSPPI  360
NTRFAPSFWT SHSDSHTLAL TAHSPLSFLS GTLPDLGIGG ASSDMLPAPL TRDLWLQVPR  420
RSAFRL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196104RRARYKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function as a negative regulator of the flowering time response to photoperiod. May act to repress cell expansion during plant development. {ECO:0000269|PubMed:14623244}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00051PBMTransfer from AT4G40060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV53764.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022884552.18e-84homeobox-leucine zipper protein ATHB-6-like isoform X1
SwissprotQ940J14e-64ATB16_ARATH; Homeobox-leucine zipper protein ATHB-16
TrEMBLA0A2G9I4D66e-90A0A2G9I4D6_9LAMI; Transcription factor HEX
STRINGMigut.L00161.1.p7e-76(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27182453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.12e-66homeobox protein 16
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]