PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV53363.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

SRS

Protein Properties

Length: 183aa MW: 19752 Da PI: 8.3431

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV53363.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	86.3	7.1e-27	20	89	5	76
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkr 76 ++C+dCGnqakkdC++ RCRtCCk+rg++C+thvkstWvpa+ r + + aa + + + + ++kr+r KZV53363.1 20 CSKCHDCGNQAKKDCSYLRCRTCCKNRGYKCHTHVKSTWVPASLRHIQPPMSAA--HGKHHPPHGPNPKRHR 89 579***************************************998764333333..3333333555555555 PP
2	DUF702	70.1	6.9e-22	90	147	97	154
DUF702 97 kkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 + + ++P+ev+ +a frcv v+s+d+ +e+aYqt+v igGhvf GiLyd+G+e+ KZV53363.1 90 QISALEDKFPSEVNFPAAFRCVGVRSMDNVVDEYAYQTSVRIGGHVFTGILYDRGPES 147 44445567************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	8.2E-44	21	146	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.9E-24	22	63	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	1.6E-19	97	145	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence Send to blast
MMMSGEEARE TVSGGSSSSC SKCHDCGNQA KKDCSYLRCR TCCKNRGYKC HTHVKSTWVP 60 ASLRHIQPPM SAAHGKHHPP HGPNPKRHRQ ISALEDKFPS EVNFPAAFRC VGVRSMDNVV 120 DEYAYQTSVR IGGHVFTGIL YDRGPESEGN GNHVTGESSS ATSGGLSHQP TTSTTAMATT 180 TDA

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:12361963, ECO:0000269\|PubMed:16740145, ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18811619, ECO:0000269\|PubMed:20154152, ECO:0000269\|PubMed:22318676}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV53363.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269\|PubMed:21976484}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011092834.1	3e-57	protein SHI RELATED SEQUENCE 3-like
Swissprot	Q9SD40	7e-38	SRS1_ARATH; Protein SHI RELATED SEQUENCE 1
TrEMBL	A0A2Z7D1W3	1e-135	A0A2Z7D1W3_9LAMI; Protein SHI RELATED SEQUENCE 1
STRING	Solyc01g110140.2.1	3e-52	(Solanum lycopersicum)
STRING	XP_009607768.1	3e-52	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4156	24	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G21400.1	4e-39	SHI-related sequence3

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]