PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV52806.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | ARF | ||||||||
Protein Properties | Length: 670aa MW: 74248.5 Da PI: 8.4249 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 76.1 | 4.1e-24 | 151 | 252 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ F + ++L +gD v+F + +++el+ KZV52806.1 151 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyK-QQRPSQELVAKDLHGVEWKFRHIYRGQPRRHLLTSGWSAFINNKKLVSGDAVLFL--RGNDGELR 246 99****************************963.3445679************************************************..4489999* PP EEEE-S CS B3 94 vkvfrk 99 ++v+r+ KZV52806.1 247 LGVRRS 252 ***997 PP | |||||||
2 | Auxin_resp | 89.1 | 7.9e-30 | 276 | 358 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsL 82 +++a+s +s F+++Yn ra +s+ +v+++k++k++ +++s G+Rfk++ etedss+r+ sG+v+ vsd+dp+rWp+SkW++L KZV52806.1 276 VVNAISLRSSFSILYNYRARSSDIIVPYHKFSKSVVQSFSFGTRFKIRCETEDSSNRSHgSGLVINVSDADPIRWPGSKWKCL 358 6899******************************************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 5.36E-41 | 147 | 259 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 6.4E-39 | 147 | 255 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.63E-22 | 149 | 251 | No hit | No description |
Pfam | PF02362 | 9.5E-22 | 151 | 252 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.38 | 151 | 253 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.5E-22 | 151 | 253 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 5.0E-25 | 277 | 358 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 670 aa Download sequence Send to blast |
MTCGLIDLNA VNTEDESALL YGPSSLSRVS KKRPELVKAS PPAVSMDLWH ACAGPLSSLP 60 KKGSAAVYFP QGHLEHHRKL PAVTCDLPSH VFCRVINVEL QADANNDEVY ALVYLVRDQQ 120 IEQKWGDGIV EAEAEDEDAE DAVKHLTSHM FCKTLTASDT STHGGFSVPR RAAEDCFPPL 180 DYKQQRPSQE LVAKDLHGVE WKFRHIYRGQ PRRHLLTSGW SAFINNKKLV SGDAVLFLRG 240 NDGELRLGVR RSTQVKSGAP LAPGIRQFNS STFSEVVNAI SLRSSFSILY NYRARSSDII 300 VPYHKFSKSV VQSFSFGTRF KIRCETEDSS NRSHGSGLVI NVSDADPIRW PGSKWKCLVV 360 KWDDSEGNNH NRVSPWEVEP SGSVSGPNGY VLPGTKRSRI SFPETKRDFP VPRGLFLIAH 420 FEDPLRFQKV FQGQEVQRLR TPFGVLEAST RPPSDTRCFP GLVFSRIHAD SASPLASTAV 480 VNDIIQCQKV SQSRETLSNL PYGRILEANQ DPGDRYTTTQ NQVQAPSLGI YWSNYHLSPT 540 LLPSPSPSSV LTSQQSNSAP PRFMPLFLGN QKKFGTSHIS LFPQCSTRNF ASSESTCHLA 600 NDTRFPRFPF QSPQLFDDDK LTSVCTKSCR LFGFSLSEGN LAASRGDNPT STAYGHENKL 660 VPSANAQVVD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldy_A | 2e-93 | 43 | 385 | 18 | 359 | Auxin response factor 1 |
4ldy_B | 2e-93 | 43 | 385 | 18 | 359 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Involved in the establishment or elaboration of tissue patterning during gynoecial development. {ECO:0000269|PubMed:10952886, ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV52806.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by AHL21/GIK. {ECO:0000269|PubMed:19956801}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020554021.1 | 0.0 | auxin response factor 3 isoform X2 | ||||
Swissprot | O23661 | 1e-164 | ARFC_ARATH; Auxin response factor 3 | ||||
TrEMBL | A0A2Z7D6T9 | 0.0 | A0A2Z7D6T9_9LAMI; Auxin response factor | ||||
STRING | Migut.M01096.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6101 | 23 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33860.1 | 1e-157 | ARF family protein |