PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV52622.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | SRS | ||||||||
Protein Properties | Length: 223aa MW: 24752.9 Da PI: 8.4174 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 173.9 | 7.5e-54 | 17 | 160 | 5 | 153 |
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkelets 103 + +CqdCGnqakkdC+h RCRtCCksrgf C+thvkstWvp++ r r+++l ++ +++ +sa++ +++++r+ + k+ a + + ++ l+ KZV52622.1 17 SRRCQDCGNQAKKDCQHLRCRTCCKSRGFVCETHVKSTWVPVSLRYPRHHTLMTK-QQQIHSATAVHHQEDRQPNPKRYRA----IYQLGPPSLGLQEG 110 568*******************************************997777665.4455555555555555543343333....33455667789999 PP DUF702 104 slPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 ++P e +a frcvrvss+d +++aY+t+vsi Ghvf GiLydqG+e KZV52622.1 111 DFPVEACLPAAFRCVRVSSLDSTIDQYAYHTSVSIRGHVFTGILYDQGPE 160 9***********************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 1.2E-53 | 17 | 160 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 1.3E-25 | 20 | 59 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 9.6E-18 | 112 | 159 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MMRREERVAD SGVSLASRRC QDCGNQAKKD CQHLRCRTCC KSRGFVCETH VKSTWVPVSL 60 RYPRHHTLMT KQQQIHSATA VHHQEDRQPN PKRYRAIYQL GPPSLGLQEG DFPVEACLPA 120 AFRCVRVSSL DSTIDQYAYH TSVSIRGHVF TGILYDQGPE LEGTGNYATG ESSTSTGIGL 180 LQQEKFVPSI TATATGTSST PYPLPFCPFT ATAAQFFDQH PKS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269|PubMed:10368174, ECO:0000269|PubMed:11706176, ECO:0000269|PubMed:16740146}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV52622.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011092834.1 | 1e-69 | protein SHI RELATED SEQUENCE 3-like | ||||
Swissprot | Q9XGX0 | 3e-44 | SHI_ARATH; Protein SHORT INTERNODES | ||||
TrEMBL | A0A2Z7CZI6 | 1e-166 | A0A2Z7CZI6_9LAMI; Protein SHI RELATED SEQUENCE 1 | ||||
STRING | Solyc01g110140.2.1 | 2e-59 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4156 | 24 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66350.1 | 2e-46 | Lateral root primordium (LRP) protein-related |
Publications ? help Back to Top | |||
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