PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV52246.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family bHLH
Protein Properties Length: 288aa    MW: 32131.7 Da    PI: 6.4063
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV52246.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.75.7e-101261154
                CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                r++ +  rE+ RRdr+N+ f eL   l ++     +K++Ka+iL+ +++ +k+L
  KZV52246.1 12 RKVQKADREKLRRDRLNEQFTELGNTLDPD----RPKNDKASILTDTIQILKDL 61
                5677889********************997....79**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.19E-14880IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.7E-13984IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.2811161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.0E-81261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.68E-71265No hitNo description
SMARTSM003537.4E-71767IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MEAETKDSTN ARKVQKADRE KLRRDRLNEQ FTELGNTLDP DRPKNDKASI LTDTIQILKD  60
LASQVDRLKA EYTALTEESR ELTQEKNDLR EEKTSLKSDI ESLNAQYQQR LRAMYPWAGM  120
DHSVVMHPSS YPFPMPVPIP TGPIPLHPSM QPYPFYGNQN STVPNPCSTY VPYMPHNSML  180
EQQSTLLVSQ VMQQGSVSHN SSKQDHMNKS PDGESRIEKS DDSNDIATDL ELKTPGSASE  240
QDSSLKQRKA KKISRKETSI TDVSSSSGCS STHSVQPSSC NSIAGGKN
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV52246.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011092862.11e-166transcription factor bHLH121
SwissprotQ9LT237e-91BH121_ARATH; Transcription factor bHLH121
TrEMBLA0A2Z7D5540.0A0A2Z7D554_9LAMI; Uncharacterized protein
STRINGSolyc01g111130.2.11e-133(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA54562434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.11e-86bHLH family protein
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]