PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV51731.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family C2H2
Protein Properties Length: 356aa    MW: 40992.8 Da    PI: 8.6511
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV51731.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2110.00131942123
                EEETTTTEEESSHHHHHHHHHH.T CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirt.H 23
                y C++Cg + s ks+  +Hi++ H
  KZV51731.1 19 YYCQYCGICRSKKSLISSHIKSqH 42
                89*******************988 PP
2zf-C2H219.33e-066282323
                ETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                C  Cg sF  + +Lk+H+++H
  KZV51731.1 62 CDECGASFIKPAHLKQHMQSH 82
                *******************99 PP
3zf-C2H218.27e-0688112123
                 EEET..TTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                 ++Cp  dC+ s++rk++L+rH+  H
  KZV51731.1  88 FTCPvdDCHSSYRRKDHLTRHLLQH 112
                 89*******************9887 PP
4zf-C2H214.10.00014117142123
                 EEET..TTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                 +kC+   C+ +F+ +sn+krH +  H
  KZV51731.1 117 FKCTveGCKVRFTVQSNMKRHVKEfH 142
                 89********************9988 PP
5zf-C2H217.98.5e-06158182123
                 EEET..TTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                 y Cp   Cgk+F+ +  L++H ++H
  KZV51731.1 158 YACPepGCGKVFKYPCKLRTHENSH 182
                 88********************999 PP
6zf-C2H217.51.2e-05248272223
                 EET..TTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                 kC+   C+  Fs++snL++Hi+  H
  KZV51731.1 248 KCSfsGCTSAFSTRSNLNQHIKAvH 272
                 799999***************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355241942IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.6E-75678IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.46E-1059112No hitNo description
SMARTSM003550.00986082IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.9886087IPR007087Zinc finger, C2H2
PROSITE patternPS0002806282IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.8E-1179114IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.005988112IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.6488117IPR007087Zinc finger, C2H2
PROSITE patternPS00028090112IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.7E-8115143IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.99E-7115143No hitNo description
SMARTSM003550.0094117142IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.138117147IPR007087Zinc finger, C2H2
PROSITE patternPS000280119142IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.5E-7154182IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.64E-5154183No hitNo description
SMARTSM003550.0014158182IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.388158187IPR007087Zinc finger, C2H2
PROSITE patternPS000280160182IPR007087Zinc finger, C2H2
SMARTSM003551.4190215IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280192215IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.4E-4192213IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035522218239IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.4E-8229269IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.22E-8230285No hitNo description
SMARTSM003550.0014247272IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.905247277IPR007087Zinc finger, C2H2
PROSITE patternPS000280249272IPR007087Zinc finger, C2H2
SMARTSM0035520278304IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280280304IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MGNEGDSGRG PIFRDIRRYY CQYCGICRSK KSLISSHIKS QHREEIAERN EGKGDGEKLN  60
ICDECGASFI KPAHLKQHMQ SHSIERSFTC PVDDCHSSYR RKDHLTRHLL QHQGKLFKCT  120
VEGCKVRFTV QSNMKRHVKE FHDGSGSHSA EVEHPKEYAC PEPGCGKVFK YPCKLRTHEN  180
SHVKLDTVEA LCSEPGCMKY FSNEQCLKEH LRSCHQYIFC DECGTKQLKK NIKRHLRMHE  240
GVCTEQIKCS FSGCTSAFST RSNLNQHIKA VHMELKPFTC SIPGCRMKFA FKHVRDNHEI  300
SGCHVYIPGN FEESDEQFRS RPRGGRKRKY PIIESLLRKR VVPPSIEEIT MNGDPE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A4e-186426119182PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D4e-186426119182PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1320328RPRGGRKRK
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV51731.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011079244.10.0transcription factor IIIA
SwissprotQ84MZ41e-134TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A2Z7CXK80.0A0A2Z7CXK8_9LAMI; Zinc finger protein 16-like
STRINGMigut.K00168.1.p1e-180(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36442447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-129transcription factor IIIA