PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV51714.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family SRS
Protein Properties Length: 390aa    MW: 39673.9 Da    PI: 8.7002
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV51714.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702198.61.9e-611843394153
      DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel.kskkqsalsstklssaeskkele 101
                 g++sCqdCGnqakkdC+++RCR CCksrg+dC+thvkstWvpa  rrer+ ++aa ss     ++++ +k++r    s+++++ s t++s+++++++++
  KZV51714.1 184 GATSCQDCGNQAKKDCTFRRCRSCCKSRGYDCTTHVKSTWVPAVYRRERKLTAAAGSS-----QSTSGAKKPRLGgASQTTTTGSPTTTSNTSPPRSFD 277
                 6789********************************************9766665544.....345566677766244555566677888888899999 PP

      DUF702 102 tss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
                 tss          lP +v+++avf+cvrv+++ddge+e+aYq++v igGhvfkG+LydqG +
  KZV51714.1 278 TSSshqdasfkdsLPGQVRAPAVFKCVRVTALDDGEDEFAYQAVVRIGGHVFKGFLYDQGRD 339
                 9888999999999***********************************************76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051422.3E-57185339IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.3E-25187227IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016244.9E-28291337IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0048364Biological Processroot development
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
VVATSRRLQP SDSGAFAEWV ASSSSAVGEL SLGFNAGPAS AAGGSSSGGL WASANAAATA  60
GRYLSGGIPP ELFFVAPATG ATINFDSNTL NSSNSAGVGV GMIPILAASP RLAQMSAAAA  120
DETTPRTSCN RSGSGGGIQL WQQQLQGEKS ASQMKKPMIP DQTMMLRSGS SSGGNIGGPS  180
LLIGATSCQD CGNQAKKDCT FRRCRSCCKS RGYDCTTHVK STWVPAVYRR ERKLTAAAGS  240
SQSTSGAKKP RLGGASQTTT TGSPTTTSNT SPPRSFDTSS SHQDASFKDS LPGQVRAPAV  300
FKCVRVTALD DGEDEFAYQA VVRIGGHVFK GFLYDQGRDC GFSNMSELHS EGGTAGGSDG  360
RNGASILDPS AVVASSGGGL LGVTSYGNSL
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV51714.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012835509.11e-115PREDICTED: uncharacterized protein LOC105956208
TrEMBLA0A2Z7D3Y80.0A0A2Z7D3Y8_9LAMI; Protein LATERAL ROOT PRIMORDIUM 1 (Fragment)
STRINGMigut.D00656.1.p1e-112(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA76552331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.42e-63Lateral root primordium (LRP) protein-related