PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV50691.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family HSF
Protein Properties Length: 448aa    MW: 49314.1 Da    PI: 6.9854
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV50691.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind116.81.3e-361372282102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d+ ++++isw+e+g++f+v++++efa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ F++g+k+ll++i+
    KZV50691.1 137 FLTKTYQLVDDPVIDDVISWNEDGSTFIVWNQTEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFSNDCFRRGEKNLLSDIQ 224
                   9*****************************************************************99.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
    KZV50691.1 225 RRKV 228
                   *986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.6E-38129220IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.4E-57133226IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.62E-35134226IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000565.0E-20137160IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.9E-32137226IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.0E-20175187IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340176200IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.0E-20188200IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MTNRITRAQH GLNRTEPPDS LQNLSSDRCT GFAHTSAASA QVTYSTRLTQ HMTYLSACTR  60
SGPTRSAHIT KLRISSHNYT ASLTYLRCAD LWFGLNEKMN IPSLLCTIGG GRSGMARIGG  120
GGDSAAGETS RSLPTPFLTK TYQLVDDPVI DDVISWNEDG STFIVWNQTE FARDLLPKYF  180
KHNNFSSFVR QLNTYGFRKV VPDRWEFSND CFRRGEKNLL SDIQRRKVAT SPLPTLAAAP  240
PLPPLVMQQA PAALPMSVSP SDSGEEQVLS SSNSPALVRE FSGSTAELVG ENDRLRKENI  300
QLNKELSHMK NMCNNIYDLM SSYSTCSSRI DNHRNSSQPN SEENGLKPLD LLPMARFCNE  360
MDIATVAESV SGSEMNNIKS AAEEISARLF GVPIGLKRGR EGEGSSSGHD MDLQLQQQGD  420
DIKSEPLDQG DDQSSSLLKR SNSRRSSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hdg_A8e-2813722610110Heat shock factor protein 1
5hdn_A8e-2813722610110Heat shock factor protein 1
5hdn_B8e-2813722610110Heat shock factor protein 1
5hdn_C8e-2813722610110Heat shock factor protein 1
5hdn_D8e-2813722610110Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00575DAPTransfer from AT5G62020Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV50691.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076201.11e-164heat stress transcription factor B-2a
RefseqXP_011076202.11e-164heat stress transcription factor B-2a
SwissprotQ9SCW41e-80HFB2A_ARATH; Heat stress transcription factor B-2a
TrEMBLA0A2Z7CUE20.0A0A2Z7CUE2_9LAMI; Heat stress transcription factor B-2b
STRINGMigut.F00357.1.p1e-143(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21822460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.13e-79heat shock transcription factor B2A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]