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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | KZV49964.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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| Family | HD-ZIP | ||||||||
| Protein Properties | Length: 833aa MW: 91617.6 Da PI: 6.461 | ||||||||
| Description | HD-ZIP family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Homeobox | 55.1 | 1.3e-17 | 25 | 81 | 5 | 57 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
++t+eq+e+Le+++ ++++ps +r++L +++ +++ +q+kvWFqNrR +ek+
KZV49964.1 25 ARYTAEQVEALERVYVECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 81
689****************************************************97 PP
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| 2 | START | 165.6 | 3.5e-52 | 162 | 369 | 2 | 204 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXX CS
START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvael 98
+ae++++e+++ka+ ++ Wv+++ +++g++++ +f+ s+++sg a+ra+g+v +++ +e+l+d++ W ++++ e+ v g g+++l ++++
KZV49964.1 162 IAEDTLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISHNCSGVAARACGLVNLQPV-KIMEILKDRPSWFRDCRGLEVFTVFPAGngGTIELLYTQT 259
78999*****************************************************.5555555555*******9999999988888********** PP
TTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHH CS
START 99 qalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaega 193
+ +++l+p Rdf+++Ry+ +l+ g++v++++S++ + p+ s++vRae+lpSg+li+p+++g+s +++v+h dlk+++++++lr+l++s+ + ++
KZV49964.1 260 YSPTTLAPaRDFWTLRYTTTLENGSLVVCERSLSGTGASPNacvASQFVRAEMLPSGYLIRPCEGGGSIIHIVDHLDLKAWSVPEVLRPLYESSKVLAQ 358
**********************************999999999******************************************************** PP
HHHHHHTXXXX CS
START 194 ktwvatlqrqc 204
k++ a+l++ +
KZV49964.1 359 KMTIAALKYIR 369
*******9865 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50071 | 15.192 | 18 | 82 | IPR001356 | Homeobox domain |
| SMART | SM00389 | 5.1E-14 | 20 | 86 | IPR001356 | Homeobox domain |
| SuperFamily | SSF46689 | 4.28E-16 | 21 | 84 | IPR009057 | Homeodomain-like |
| CDD | cd00086 | 1.73E-15 | 23 | 83 | No hit | No description |
| Pfam | PF00046 | 3.1E-15 | 25 | 81 | IPR001356 | Homeobox domain |
| Gene3D | G3DSA:1.10.10.60 | 1.4E-17 | 26 | 81 | IPR009057 | Homeodomain-like |
| CDD | cd14686 | 1.28E-5 | 75 | 114 | No hit | No description |
| PROSITE profile | PS50848 | 27.519 | 152 | 380 | IPR002913 | START domain |
| CDD | cd08875 | 1.12E-69 | 156 | 372 | No hit | No description |
| Gene3D | G3DSA:3.30.530.20 | 1.1E-21 | 161 | 363 | IPR023393 | START-like domain |
| SuperFamily | SSF55961 | 9.06E-37 | 161 | 373 | No hit | No description |
| SMART | SM00234 | 3.6E-42 | 161 | 371 | IPR002913 | START domain |
| Pfam | PF01852 | 6.2E-50 | 162 | 369 | IPR002913 | START domain |
| Pfam | PF08670 | 3.9E-48 | 690 | 832 | IPR013978 | MEKHLA |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0009855 | Biological Process | determination of bilateral symmetry | ||||
| GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
| GO:0009956 | Biological Process | radial pattern formation | ||||
| GO:0010014 | Biological Process | meristem initiation | ||||
| GO:0010051 | Biological Process | xylem and phloem pattern formation | ||||
| GO:0010089 | Biological Process | xylem development | ||||
| GO:0030154 | Biological Process | cell differentiation | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0008289 | Molecular Function | lipid binding | ||||
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 833 aa Download sequence Send to blast |
MAMVAQHHSS SSSSINKNLD SGKYARYTAE QVEALERVYV ECPKPSSLRR QQLIRECPIL 60 SNIEPKQIKV WFQNRRCREK QRKESTGLQS VNRKLSAMNK LLMEENDRLQ KQVSQLVSEN 120 GYMRQQLHSS SMATTDASSE SAGDKPQHPL KDANNPAGLL SIAEDTLAEF LSKATGTAVD 180 WVQMPGMKPG PDSVGIFAIS HNCSGVAARA CGLVNLQPVK IMEILKDRPS WFRDCRGLEV 240 FTVFPAGNGG TIELLYTQTY SPTTLAPARD FWTLRYTTTL ENGSLVVCER SLSGTGASPN 300 ACVASQFVRA EMLPSGYLIR PCEGGGSIIH IVDHLDLKAW SVPEVLRPLY ESSKVLAQKM 360 TIAALKYIRQ IAQETSGETV VSLGRQPAVL RTFSQRLSRG FNDAINMFNE DGWSFLNGDG 420 AEDVVVAICS AKNLNSDSNT LSLTGGILCA KASMLLQNVP PAVLVRFLRE HRSEWADFNM 480 DAYSSASLKA SSSAYPGMRP TRFSGSQIIM PLGQTIEHEE MLEVVRLEGH SFTHEDAFLS 540 RDIHLLQICS GVDDNALGAC SELVFALIDE MFPDDAPLLP SGFRIIPLEP KPDAVISHKT 600 LNLTSSLEVG PSTSHAVETT SPSYNARSVL TIAFQFPFES NLQVSVANMA RQYIRSVISS 660 VQRVAMAISP SGLCPAVRPK LSSSSPEALT LACWICQSFR YYIGADLLSE GSDNRESVLK 720 TLWLHQDAIL CCSLKALPVF IFANQAGLDL LETTLVALQD ITLDKIFNDS GRKALFSEFS 780 KIMQQGYAYL PGGICTSTMG RHASYDQVII WKVVEEENNV HCLALSFVNW SFM |
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Probable transcription factor involved in the regulation of interfascicular fiber (cortical cells) and secondary xylem differentiation in the inflorescence stems. Required for lateral shoot meristems (LSMs) and flower meristems (FMs) initiation. May be involved in the determination of vascular patterning and organ polarity (PubMed:10559440, PubMed:11169198, PubMed:11402186, PubMed:15111711, PubMed:15598805, PubMed:7555701). Directly regulates the expression of AGO10, ZPR1, ZPR2, ZPR3 and ZPR4 (PubMed:22781836). Required to regulate adaxial-abaxial polarity and leaf axial patterning (PubMed:20807212). {ECO:0000269|PubMed:10559440, ECO:0000269|PubMed:11169198, ECO:0000269|PubMed:11402186, ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:20807212, ECO:0000269|PubMed:22781836, ECO:0000269|PubMed:7555701}. | |||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | KZV49964.1 |
| Regulation -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | INDUCTION: By auxin. Repressed by ZPR and miR165. Induced by DOF5.1 (PubMed:20807212). {ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:20807212}. | |||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_011089912.1 | 0.0 | homeobox-leucine zipper protein REVOLUTA | ||||
| Swissprot | Q9SE43 | 0.0 | REV_ARATH; Homeobox-leucine zipper protein REVOLUTA | ||||
| TrEMBL | A0A2Z7CYY7 | 0.0 | A0A2Z7CYY7_9LAMI; Homeobox-leucine zipper protein REVOLUTA | ||||
| STRING | VIT_06s0004g02800.t01 | 0.0 | (Vitis vinifera) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA457 | 24 | 140 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G60690.1 | 0.0 | HD-ZIP family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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