PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV49399.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family GRAS
Protein Properties Length: 563aa    MW: 62161.3 Da    PI: 5.0679
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV49399.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS452.72.3e-1381995611374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 lv++L++cAeav++++l+ a+al++++  la +++ +m+++a+yf+eALa+r+++        l ps+ +++  ++    +  f+e++P+lkf+h+taN
  KZV49399.1 199 LVHTLMACAEAVQKENLKFAEALVQNIGFLAVSQAGAMRKVATYFAEALARRIYK--------LYPSNPQDSAFTDL--LQMHFYETCPYLKFAHFTAN 287
                 689***************************************************9........44444443334444..4446**************** PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
                 qaIlea++g+ rvH+iDf+++qG+QWpaLlqaLa Rp+gpp++R+Tg+g+p++++++ l+e+g++La++A++++v+fe++ +va++l+dl+  ++++++
  KZV49399.1 288 QAILEAFAGKARVHVIDFSMKQGMQWPALLQALALRPGGPPTFRLTGIGPPSYDNTDHLQEVGWKLAQLAQTINVEFEYKGFVASSLADLDSTMFDIRE 386
                 *************************************************************************************************** PP

        GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres..eerikvErellgreiv 295
                 gE++aVn++++lh+ll++++++e+    vLk+vk+l+P+++++veqea+hn++ Fl+rf e+l+yys+lfdsle+        e+++++++++lgr+i+
  KZV49399.1 387 GETVAVNSIFELHQLLARPGAIEK----VLKVVKELKPEILTIVEQEANHNGPIFLDRFNESLHYYSTLFDSLESCTTDGVvsEQDKVMSEVYLGRQIC 481
                 ************************....*********************************************8775554355**************** PP

        GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 nvvaceg +r+erhetl +Wr+rl++ GF+pv+l+++a+kqa++ll+ ++ +dgyrv+e++g+l+lgW++rpL+++SaW+
  KZV49399.1 482 NVVACEGVDRVERHETLDQWRSRLGSIGFSPVHLGSNAYKQASMLLALFAgGDGYRVDENNGCLMLGWHTRPLIATSAWK 561
                 *******************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF120411.2E-2739107IPR021914Transcriptional factor DELLA, N-terminal
SMARTSM011298.7E-2539114No hitNo description
PROSITE profilePS5098566.702173540IPR005202Transcription factor GRAS
PfamPF035148.1E-136199561IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006808Biological Processregulation of nitrogen utilization
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0010218Biological Processresponse to far red light
GO:0010233Biological Processphloem transport
GO:0042538Biological Processhyperosmotic salinity response
GO:2000033Biological Processregulation of seed dormancy process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 563 aa     Download sequence    Send to blast
MKRDQLNQEN NHSGSCSSSR KGKMWCSEHD GGQNDAGVDE LFAVLGYSVK PSDMESVVQK  60
IEQLEEVMGT IPQDDGQLSH LASETVHYNP SDMSSWLESM ISGLNPLTEF DSSSTVVQYP  120
FLRSAQMVVD SDFGSDLISI PGKAVYPRAQ TPPQPTSPPQ KKMKTAPDAG NQAAVSWGLT  180
GESTRQVVLV DSQENGIRLV HTLMACAEAV QKENLKFAEA LVQNIGFLAV SQAGAMRKVA  240
TYFAEALARR IYKLYPSNPQ DSAFTDLLQM HFYETCPYLK FAHFTANQAI LEAFAGKARV  300
HVIDFSMKQG MQWPALLQAL ALRPGGPPTF RLTGIGPPSY DNTDHLQEVG WKLAQLAQTI  360
NVEFEYKGFV ASSLADLDST MFDIREGETV AVNSIFELHQ LLARPGAIEK VLKVVKELKP  420
EILTIVEQEA NHNGPIFLDR FNESLHYYST LFDSLESCTT DGVVSEQDKV MSEVYLGRQI  480
CNVVACEGVD RVERHETLDQ WRSRLGSIGF SPVHLGSNAY KQASMLLALF AGGDGYRVDE  540
NNGCLMLGWH TRPLIATSAW KTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-6819456014378Protein SCARECROW
5b3h_A1e-6819456013377Protein SCARECROW
5b3h_D1e-6819456013377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV49399.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070609.10.0DELLA protein GAI1
SwissprotQ8S4W70.0GAI1_VITVI; DELLA protein GAI1
TrEMBLA0A2Z7CXL30.0A0A2Z7CXL3_9LAMI; Uncharacterized protein
STRINGMigut.E00445.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21262462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.10.0GRAS family protein